Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12490 258 / 1e-87 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) AT5G05110 191 / 6e-61 Cystatin/monellin family protein (.1) AT2G40880 120 / 1e-34 ATCYSA, FL3-27 cystatin A (.1) AT5G12140 102 / 9e-28 ATCYS1 cystatin-1 (.1) AT5G47550 62 / 3e-12 Cystatin/monellin superfamily protein (.1) AT4G16500 55 / 8e-10 Cystatin/monellin superfamily protein (.1) AT2G31980 50 / 1e-07 AtCYS2 PHYTOCYSTATIN 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008702 [exp] 375 / 3e-133 AT3G12490 241 / 9e-81 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10026779 [exp] 110 / 8e-31 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Lus10041257 [exp] 49 / 2e-07 AT2G31980 72 / 9e-17 PHYTOCYSTATIN 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192200 [exp] 290 / 7e-100 AT3G12490 303 / 6e-105 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.001G032900 [exp] 288 / 1e-99 AT3G12490 276 / 2e-95 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.006G033201 [exp] 237 / 2e-79 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.016G030900 [exp] 238 / 3e-79 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.009G022300 [exp] 112 / 8e-32 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.001G225800 [exp] 112 / 1e-31 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.006G014500 [exp] 51 / 3e-08 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1) Potri.002G235800 [exp] 46 / 2e-06 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1) Potri.014G149300 [exp] 41 / 0.0001 AT2G31980 90 / 1e-23 PHYTOCYSTATIN 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0121 [flax] [poplar] Cystatin PF00031 [flax] [poplar] Cystatin Cystatin domain
Representative CDS sequence Show only first row Show all	>Lus10026117 pacid=23173150 polypeptide=Lus10026117 locus=Lus10026117.g ID=Lus10026117.BGIv1.0 annot-version=v1.0 ATGGATCTCCCAACCTTCACTTCCTTCACTCTCACTCTTCTCCTCATCTCTTCATCTCCTCCCGCGATCGCCTTCAACTCCGGTCTTTCTCAAGTCTCCG ATCATCAAATGGCCACCCCTAACGTCCTCGGAGGCGTTCACGATTCCCCCGCCGCCGACTCCAACAGCGCTAGCACCGAGGGGCTCGCTCGGTTCGCCGT CGATGAGCACAACAAGAAGGAGAATGCGGTGGTGGAGTTTCTGAGGGTTGTGGAAGCGAAAGAGCAAGTGGTGGCTGGGACGATGCATCATCTGGTTATA GAGGCGGCTGATGCTGGTGAGAAGAAGCTTTACAAGGCTAAAGTGTGGGTGAAGCCGTGGATGAACTTCAAGGAGCTGCAGGAGTTCAAGCATCATTCTG AGGGTTCCCCTCAGCTCACCTCTTCTGATCTTGGTGCTAAGAAAGGATGCCATGCATCTGGGCTGAAGGAGGTGGCAAATCATGATCCTGCAGTGCAAGA TGCAGCTAATCATGCTCTGAAGACGATTCAGCAGAGGTCCAACTCACTCTTCCCTTATGAGCTTCAAGAAGTTTCTGAAGCCAAAGCTGAGGTGGTAGAT GATTCTGCAAAATTCCATTTGGTTCTCAAGGTGAAGAGGGGAAGCACCGAAGAGAAGCTGAAGGTTGTGGTGCACAAGAACAATGAAGGCACTTTCCATC TGAATCATATGGAGCCAGCCCACTGA
AA sequence Show only first row Show all	>Lus10026117 pacid=23173150 polypeptide=Lus10026117 locus=Lus10026117.g ID=Lus10026117.BGIv1.0 annot-version=v1.0 MDLPTFTSFTLTLLLISSSPPAIAFNSGLSQVSDHQMATPNVLGGVHDSPAADSNSASTEGLARFAVDEHNKKENAVVEFLRVVEAKEQVVAGTMHHLVI EAADAGEKKLYKAKVWVKPWMNFKELQEFKHHSEGSPQLTSSDLGAKKGCHASGLKEVANHDPAVQDAANHALKTIQQRSNSLFPYELQEVSEAKAEVVD DSAKFHLVLKVKRGSTEEKLKVVVHKNNEGTFHLNHMEPAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026117 [exp]	0	1
					Lus10022013 [exp]	1.4	0.8201
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	5.5	0.8165
AT5G44005			unknown protein		Lus10003609 [exp]	9.2	0.7931
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	12.0	0.7628
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	12.1	0.8139
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	14.7	0.7689
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	17.7	0.7694
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	18.2	0.7865
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	24.4	0.7736
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	27.2	0.7549

Compare expression of checked genes

Lus10026117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.