Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 364 / 2e-121 Pectin lyase-like superfamily protein (.1) AT4G20050 283 / 7e-90 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008272 [exp] 496 / 1e-172 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 494 / 6e-172 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 457 / 2e-157 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10038369 [exp] 340 / 5e-112 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 282 / 1e-89 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10036230 [exp] 281 / 1e-89 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10038370 [exp] 191 / 3e-55 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008700 [exp] 115 / 8e-31 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 110 / 8e-29 ND 48 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075500 [exp] 376 / 5e-126 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 373 / 8e-125 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075400 [exp] 370 / 1e-124 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G074600 [exp] 285 / 1e-90 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.001G159900 [exp] 285 / 2e-90 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026120 pacid=23173162 polypeptide=Lus10026120 locus=Lus10026120.g ID=Lus10026120.BGIv1.0 annot-version=v1.0 ATGTGGACAACGTTAATTGTATGGAGTTGTATGATACATGCAACAAGCTCGACCAAATTCGACCATCCTTCTCCCAGGCTCCGGGAATTCGCAGCCAAGA TCGAAAAATTTGCATCCCGTACGCCGCTGCCTCTGGTCCGGCAGCCTCCGCAGGTTGGAGGAGTGTTTTACCCGATCGGGTACGGGGCGGATCCAACGGG CCATAATGACAGCAGTGACGCGATACAGAAGGCATTGAACGATGCGTTTCAGCAGCATGAAGACGACGCCGTTTATTTGATGAACGGAATTAAGGATTTG GGCGGTGCTGTCGTTGACCTTCAAGGTGGAAGATACCTCGTCTCCAAACCCATCGTTTTCCCTCCTTCCGGCGGCGGCAACCTTCTGTTCAAAGAAGGGA GTCTCAAAGCCGGAGCAGGGTTCCCGAGCGACCGGTACCTAGTGGAAGTATTAAACCCCAACAAATCAGAGGTGTTGATCGACAAAACGGACGACGTCGG GATTTTTCAGGGCAAGGGTAGCTACTACGAGGACTTAACCTTCACAGACTTGTTGTTCGACTCTGGCTTCTCCGGCGGCGGCCTCGCCGTCGTTGATGCT ACCCGAACACGCATCGTCAACTCCTACTTCCTCAACTTCACCTCCCAAGGAATCCTGGCACACACATGCATGCAGGTCCAAGGCGGCCACGAAACGTTCA TCAAAGAATGCTTCATCGGGCAGCGGCCGAACGTGGGCGGCACCAAGGAAGAAGAGAGGAACTTCTCCGGCACGGGGATCGACCTGGCGAGCAACGACAA CGTGGTAACGGATGTCGTGCTATTCGCTTCGGAGATCGGGCTGCTGATCAGAGGGCAGGCCAACATGATCACCGGACTCCACACCTACAACAAGTCTTGG CTCTTCGGCGGGATGGGGATCCTGGCCAAGGTCAACGCCGCCTACAACCGGATCGTCAACTGCTTCATCGACTACAACCAGATAGTGCTGGAGGACCCTT ACTTCATCCTCGTCACCAACAACTTCTTCCTGGGACACGGCGGCATCCTACTGAAGTCAGTCAACGGGAGGGCCACGGCGTTGACAATCACCAACAATTA CTTCAACGGGTTCGGGATGGCCCCCGCGGTGGATTTGGCCGGGGAGTTTAACTTCATCCACGACGTGGTGGTCTTGCAGAACCAAGGTAGCAGCGTGACG GTGAAGTCTACGGCGGCGAAGATGACGGTGGCCGGGAAAGGGACTAAATGGGTGGCCGATTTCAACGACGTGCTGCTATTTCCTAACAAGATTGAGCATT TCCAGTACTCTTTTGCGGTACTCAACAAAAAGAAAAGCGTGGGTTGGGGTGGGCCCAGGTTTCCGATTCATGCGGCGACGGCCGTGTCGGCGAATGTGGT GGTGGTGGAGAGCGAGGATGAGGTGGACGGGGTTGTTTCGGTGGTGGTCGATCAATTCAATCCCATTACTAAAGAATCTAAGGACGTCCATTTTACTTGA
AA sequence Show only first row Show all	>Lus10026120 pacid=23173162 polypeptide=Lus10026120 locus=Lus10026120.g ID=Lus10026120.BGIv1.0 annot-version=v1.0 MWTTLIVWSCMIHATSSTKFDHPSPRLREFAAKIEKFASRTPLPLVRQPPQVGGVFYPIGYGADPTGHNDSSDAIQKALNDAFQQHEDDAVYLMNGIKDL GGAVVDLQGGRYLVSKPIVFPPSGGGNLLFKEGSLKAGAGFPSDRYLVEVLNPNKSEVLIDKTDDVGIFQGKGSYYEDLTFTDLLFDSGFSGGGLAVVDA TRTRIVNSYFLNFTSQGILAHTCMQVQGGHETFIKECFIGQRPNVGGTKEEERNFSGTGIDLASNDNVVTDVVLFASEIGLLIRGQANMITGLHTYNKSW LFGGMGILAKVNAAYNRIVNCFIDYNQIVLEDPYFILVTNNFFLGHGGILLKSVNGRATALTITNNYFNGFGMAPAVDLAGEFNFIHDVVVLQNQGSSVT VKSTAAKMTVAGKGTKWVADFNDVLLFPNKIEHFQYSFAVLNKKKSVGWGGPRFPIHAATAVSANVVVVESEDEVDGVVSVVVDQFNPITKESKDVHFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20040			Pectin lyase-like superfamily ...		Lus10026120 [exp]	0	1

Compare expression of checked genes

Lus10026120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.