Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10970 81 / 3e-17 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 75 / 1e-15 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G25160 73 / 8e-15 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G01860 72 / 2e-14 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G66140 68 / 8e-13 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G24625 65 / 4e-12 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G57520 62 / 2e-11 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G67030 62 / 3e-11 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G27880 62 / 1e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G14010 59 / 3e-10 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008698 [exp] 340 / 8e-116 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10014350 [exp] 69 / 4e-13 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10006960 [exp] 64 / 7e-12 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10026597 [exp] 63 / 1e-11 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10030764 [exp] 64 / 2e-11 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10013243 [exp] 64 / 2e-11 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10025471 [exp] 62 / 2e-11 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10028997 [exp] 62 / 4e-11 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10003681 [exp] 62 / 8e-11 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G123800 [exp] 132 / 5e-36 AT5G25160 92 / 4e-22 zinc finger protein 3 (.1) Potri.003G192000 [exp] 117 / 4e-30 AT5G25160 82 / 4e-18 zinc finger protein 3 (.1) Potri.006G063800 [exp] 117 / 7e-30 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123900 [exp] 111 / 4e-28 AT5G25160 88 / 2e-20 zinc finger protein 3 (.1) Potri.006G261700 [exp] 74 / 5e-15 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 72 / 2e-14 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 72 / 5e-14 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 71 / 1e-13 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G134800 [exp] 70 / 2e-13 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.004G084100 [exp] 68 / 6e-13 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026121 pacid=23173294 polypeptide=Lus10026121 locus=Lus10026121.g ID=Lus10026121.BGIv1.0 annot-version=v1.0 ATGGAGCCCATTGCAAAATCAGAGAGTCAATCTCCTTCCAATGCATCCAGCGTCTCGGCGACGGCCTCGTCGGAAGGCGCAATCCGACAGAAGAAGGTTG CGGCGGAGTTGGTCAACGACTTGGAGATGAAGGAGAAAGTTACACAGCTTTCTCAATCATCTTCGTCTTCTCCCGCTGCCCAGCCTCCTTCCGGCACTAC TAGTCCGAGAGTCGTGCTCGATCTGAAGCTCTCCAATGACCGCCATCCAAATCCTGAGAATAAATCTTTACAGCTAACCCTCTTCAACGGATTTAATAAC AAGGAGGAGGAAGAAGAAGGAGATTCGTCGAGCCACCTCCACCCCCAACCCCACCACCACCACTTCCTTCACAACATGAATCGTGTTGTGGATGTGGAAG AGGAAGAGGAGGGGAGGCTCATCGAGTCGTCGGAGCGATCTAGGGTTTTCTCGTGCAATTTTTGCAAGAGAGAATTCTCGACGTCTCAAGCGCTAGGGGG GCACCAAAACGCCCACAAGACTGAGAGGGCTATAGCCAAGAAGCGACAAGGGATTGAGATCGGGGGTGGTATTGGTCATTTCCCATACCACCCTTACTCA ACCCTATCGCCGCTTCCCTTCTATGGCTCCTCGTCTTTCAGTAGGTCGTCTTTGTCGATTCTCGGTCTGAGGGCCGACTCCTTCATCCACAAGCCGCCAT CTTCCTACACATGGAGTTCTCCGATCGCCACTGCATCTCTGGCCTACCGCAGCCGTTATGGTGCCGCCCCCTGGCCTAGGGCAGGACCCTTGCAGTCTCA TCTTGACCGGCTCAGATTGGAAAGCCTTGGTGCCCTACACAACAACAATTCGACCAACAACAAGGTTGAGACAATTAGCTTGCTGAAGAACTTTGGTCTC TCTAATAATAACAATAATAATATTAATTGTTCGCCGAATATTATTACAATCGGGAGTGGATCAAGTCAGACTCCTCTTGATTCTCCGTCATCCACTTCCG GTGGCGGCGGAATTGTCCCGCCGGCGGAGGGCTCCGAGCTTGATTTATCGCTTAAGCTTTGA
AA sequence Show only first row Show all	>Lus10026121 pacid=23173294 polypeptide=Lus10026121 locus=Lus10026121.g ID=Lus10026121.BGIv1.0 annot-version=v1.0 MEPIAKSESQSPSNASSVSATASSEGAIRQKKVAAELVNDLEMKEKVTQLSQSSSSSPAAQPPSGTTSPRVVLDLKLSNDRHPNPENKSLQLTLFNGFNN KEEEEEGDSSSHLHPQPHHHHFLHNMNRVVDVEEEEEGRLIESSERSRVFSCNFCKREFSTSQALGGHQNAHKTERAIAKKRQGIEIGGGIGHFPYHPYS TLSPLPFYGSSSFSRSSLSILGLRADSFIHKPPSSYTWSSPIATASLAYRSRYGAAPWPRAGPLQSHLDRLRLESLGALHNNNSTNNKVETISLLKNFGL SNNNNNNINCSPNIITIGSGSSQTPLDSPSSTSGGGGIVPPAEGSELDLSLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10026121 [exp]	0	1
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10012746 [exp]	6.2	0.8348
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	6.9	0.9013
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	9.7	0.9013
					Lus10007927 [exp]	11.9	0.9013
					Lus10023587 [exp]	13.7	0.9013
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	15.3	0.9013
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	16.8	0.9013
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	18.1	0.9013
AT1G17930			Aminotransferase-like, plant m...		Lus10016922 [exp]	19.4	0.9013
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	20.6	0.9013

Compare expression of checked genes

Lus10026121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.