Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008697 [exp] 221 / 2e-72 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G033500 [exp] 135 / 3e-39 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01081 [flax] [poplar] Aldolase KDPG and KHG aldolase
Representative CDS sequence Show only first row Show all	>Lus10026122 pacid=23173310 polypeptide=Lus10026122 locus=Lus10026122.g ID=Lus10026122.BGIv1.0 annot-version=v1.0 ATGGCCCATAGTGATGCCATTTCTTGCAATATCTCAATAGACTATCGTCTCTCACTCTCTGTGGCCAGTCTCGTGGAGATGGGCGCCTATTCTTCACCAT TGCGTTGGTCACTTCCAGTAATTCCCTCACAAGAACCCACCAATACTATAGATTCCTTCTCAAGAGTTTGCTGCTGCCCTTCTTCTTCTCGGTTCGCTTC TTCTTCCCCCGACACCAAAACAATGACCTTATCGTCAATTCAGAATTCCGGCATCATCGCTTGCCTTCGCTCCTCCATCTGGAGATTACAATGTCCACAT CAGGTTGTTCAGCGCTTGGTTGAGGCTTACCCTACGGTCTGCTTGGGGGTTGGCACAGTTTTAAGCGCTGAGGATGCCGTAAATGCAATGAATGCCGGAG CCAGATTCATCATGAGTCCTGCCACCGTGAAGATGTTGTCTGCATACACTGCTGGTGCAAACATCATGAAGATTTACCCTGTTTCTACATTGGGTGGAGT CAAGTACATTGCAGCTCTGAAGAAGCCTTTCTCCCATATACCGATGGTTGTTTCTCAAGGAGTGACAATAGGTTTCACACTTTGTTCCTGA
AA sequence Show only first row Show all	>Lus10026122 pacid=23173310 polypeptide=Lus10026122 locus=Lus10026122.g ID=Lus10026122.BGIv1.0 annot-version=v1.0 MAHSDAISCNISIDYRLSLSVASLVEMGAYSSPLRWSLPVIPSQEPTNTIDSFSRVCCCPSSSRFASSSPDTKTMTLSSIQNSGIIACLRSSIWRLQCPH QVVQRLVEAYPTVCLGVGTVLSAEDAVNAMNAGARFIMSPATVKMLSAYTAGANIMKIYPVSTLGGVKYIAALKKPFSHIPMVVSQGVTIGFTLCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026122 [exp]	0	1
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	4.5	0.9186
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	6.2	0.9015
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	7.2	0.9003
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	9.2	0.8771
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	9.2	0.9030
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	9.2	0.8859
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	12.0	0.8848
					Lus10016109 [exp]	13.7	0.8689
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	13.8	0.8997
AT4G37810			unknown protein		Lus10007240 [exp]	14.2	0.8856

Compare expression of checked genes

Lus10026122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.