Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 579 / 0 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 303 / 3e-99 HXXXD-type acyl-transferase family protein (.1) AT2G19070 269 / 1e-85 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 231 / 3e-71 HXXXD-type acyl-transferase family protein (.1) AT3G48720 223 / 2e-68 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 192 / 3e-56 HXXXD-type acyl-transferase family protein (.1) AT1G65450 174 / 2e-49 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G27620 161 / 9e-45 HXXXD-type acyl-transferase family protein (.1) AT5G17540 145 / 9e-39 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002321 [exp] 550 / 0 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026097 [exp] 495 / 2e-174 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 408 / 4e-140 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 402 / 5e-138 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 344 / 3e-115 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 320 / 1e-104 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 302 / 2e-98 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 301 / 6e-98 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 271 / 3e-86 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G183900 [exp] 585 / 0 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 584 / 0 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 475 / 2e-166 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 447 / 2e-155 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 436 / 7e-151 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 431 / 5e-149 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 322 / 4e-106 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 305 / 1e-99 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.001G326300 [exp] 237 / 2e-73 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 233 / 7e-72 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10026123 pacid=23173151 polypeptide=Lus10026123 locus=Lus10026123.g ID=Lus10026123.BGIv1.0 annot-version=v1.0 ATGGAAATTAAGGTGAAAGAATCGACGCTGGTCCAACCTGCCGCTCCGACGCCGACGAGGAGACTCTGGCTCTCCGACGCCGACCTCGTCGTCCTCAGGA CTCACCTCCTGACCGTCTACTTCTATCGGCAGCCTATCACTAGGACCGCAGATTTCTTTGACCCTGCAAAGCTGAAGCAGGGTTTGAACAAGGCCCTAGT GCCTTTTTACCCGATGGCCGGCCGTCTTGGGCTGGCCGAAAATGATGGTCGGGTTGAGATCGACTGTAACTCTCAAGGAGTTCTGTTCGTGGTTGCGGAG TCGACTTCGGTCGTTGACGATTTCGGGGACTTTGCTCCGTCGTTGGAGCTCCGGCAGCTTATCCCGGCTGTTGACTACTCTGCTGGGATCTCATCCTACC CTTTGTTGGTTGTTCAGGTAACATTCTTTAACTGCGGCGGAGTATCACTCGGGGTTGGAATACAACACCAAGTCGCCGACGGCTTTTCAAGTCTCCACTT CATCAACACATGGTCCGATATGTGTCGAGGCCTTCCCCTAAATCTCCCTCCGTCGATTGACCGGACCCACCTTCGTCCTCGAGACCCACCAACGCCCACC TACCATCACATCGAATACCAGCCTTCACCAGCCATGAAAACTGCTAACCTCACCAGTGGAGCCATTGTCACATGCCGAATCTTCAAGCTCACAAAGGACA AGATCAACACACTTAAAGAAGCACGAAACCCAAACGACGCCGTTAGGCACTACAGCTCCTACGAGGTCCTAGCCGACCACATCTGGCGGTGTGTCTCCAA AGCCAGGGGCCTCTCCGGAGACCAGGAAACGAAACTATACATCGCTACCGATGGACGTTCCCGTCTCCGGCCGCCCCTCCCACCTGGATACTTCGGCAAC GTGATTTTCACGACTACCCCGGTGGTCACGGTGGGCGAGCTGTTAAACCGGCCGAGTTGGTCAGTCGCGGGTCGGATCCGTGACGCTTTGGCCCGGATGG ATGATGAGTATCTGAGATCGGCGTTGGATTACCTGCACGTGGAACCGGACCTGTCGTCGTTGGAGAAAGGAGCCCATACTTTTAGGTGTCCGAACTTGGG GATAACTAGTTGGGCCCGACTTCCGGTCCATGATGCGGATTTCGGATGGGGGAGGCCCGTTTTTATGGGCCCTGGGGCAGTTCCGTTTGAGGGGCTATCG TTCTTGCTGCCGAGCCCAACTAAGGATGGGAGTATGTCGGTGGTGATCTCGTTGCTCGCCGAGCACATGAAGGAATTCGAGAAGCTGATCAATGAAGTAT GA
AA sequence Show only first row Show all	>Lus10026123 pacid=23173151 polypeptide=Lus10026123 locus=Lus10026123.g ID=Lus10026123.BGIv1.0 annot-version=v1.0 MEIKVKESTLVQPAAPTPTRRLWLSDADLVVLRTHLLTVYFYRQPITRTADFFDPAKLKQGLNKALVPFYPMAGRLGLAENDGRVEIDCNSQGVLFVVAE STSVVDDFGDFAPSLELRQLIPAVDYSAGISSYPLLVVQVTFFNCGGVSLGVGIQHQVADGFSSLHFINTWSDMCRGLPLNLPPSIDRTHLRPRDPPTPT YHHIEYQPSPAMKTANLTSGAIVTCRIFKLTKDKINTLKEARNPNDAVRHYSSYEVLADHIWRCVSKARGLSGDQETKLYIATDGRSRLRPPLPPGYFGN VIFTTTPVVTVGELLNRPSWSVAGRIRDALARMDDEYLRSALDYLHVEPDLSSLEKGAHTFRCPNLGITSWARLPVHDADFGWGRPVFMGPGAVPFEGLS FLLPSPTKDGSMSVVISLLAEHMKEFEKLINEV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026123 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10024064 [exp]	4.7	0.8533
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10041762 [exp]	7.7	0.8705
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	8.9	0.8362
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020387 [exp]	9.6	0.7545
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	10.4	0.8394
AT2G46910			Plastid-lipid associated prote...		Lus10036340 [exp]	11.4	0.8155
AT2G23140			RING/U-box superfamily protein...		Lus10019308 [exp]	12.1	0.8240
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	28.6	0.8309
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	30.5	0.8274
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	33.5	0.8220

Compare expression of checked genes

Lus10026123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.