Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 378 / 2e-125 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 374 / 4e-124 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 342 / 6e-112 FUT7 fucosyltransferase 7 (.1) AT1G14100 340 / 2e-111 FUT8 fucosyltransferase 8 (.1) AT2G15350 311 / 7e-101 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14110 307 / 4e-99 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G14080 300 / 9e-96 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15390 297 / 6e-95 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 295 / 2e-93 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G74420 273 / 3e-85 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041642 [exp] 480 / 1e-165 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 437 / 8e-149 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 391 / 5e-131 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 389 / 3e-130 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 390 / 6e-130 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041645 [exp] 368 / 2e-122 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 355 / 1e-116 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10036776 [exp] 356 / 2e-116 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 332 / 1e-109 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034100 [exp] 461 / 3e-158 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 443 / 7e-151 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 408 / 5e-137 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 405 / 3e-134 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 397 / 2e-131 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 386 / 2e-128 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 372 / 4e-122 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10026128 pacid=23173250 polypeptide=Lus10026128 locus=Lus10026128.g ID=Lus10026128.BGIv1.0 annot-version=v1.0 ATGTATATCCTGAAACTGAATTCAGAGCCGCCATCAACAGAATTTCAATTCACAAAGACGGCGAAATTCAGATATACATTTCTGCTAACGACATTAACAA CTTGCACCGTTGCGTCTCTTCTCCTCCTCGTCATACCTCCTCCGATCAACCTCCGATTTTCGGTACAACAACTTTCCTCTCCTGACGATGGACAATCCTG CGCCAGCAGAAATCGCCATGGCTCGTCGAATCTCAAACTTCCGTCTCCTTACCTTCGTTCCAGGCTTCGAGAATACGAGCAGGATCACAAGCTTTGCGAG CCATTCTCCGAACTGTTCAACACAACTTTCCGAGAATCGGTCAGGAAGAAGAAGAAGAATAACGATTTGAACTACTCTGGCCCGGATGATCATTGCAGGT ACGTTATCTTCTCGCGGCCAACAAACGGATTAGGGAACAGGATGCTGAGTTTGTCGGCTGCATTCGTCTACGCCCTCTTGACTAATCGAGTCCTTCTCGT GGATTTTGGCCCAGACATGGTCGATCTCTTCTGTGAACCGGTTCAAAACTCCACCTGGTTGTTACCCGAAGACTTCCATTTCGGAGATCAATTCTACGGC TCCAAATCAAGGAAAGTCGACGACTTTGGAGAATTCCTGAAGAACAATCAGACTACCGATCTAAATGTTTCGTCATTCCTCCATCTCAATCTCGGATACG GCTACAACGAATACGACAAGCTTTTCTACAGAGACGAGAATCAGGAAAGAATTAAGAGAATCCCCTGGCTGATTCTGGAATCTGATCAGTATTTCATTCC TTTCCTTTTCCTGATGCCTTCCTTCAGGAAAGAACTCGACAGGTTATTTCCTGACAGGGAAACCATTTTCCATCACATAGCTAGATACCTCTTCAGCCCG TCGAACCAAGCGTGGGGACTCATCACCCGATTCCACAAATCATATCTCGCGAACGCTGACCAGAGAATTGGCCTCCAGATTCGGGTCATGAACCCGGAAA TCAGCCCGACTCCCCTAGTCCTGAAGCAGATTCTCAGGTGCACTCAAATGGAAGCACAAATCCTGCCAGAATTCCAGCTCAACAATACCATCGGAAAAAA GACCGAATCATCATCGTCATTATCGAAAGCAGTTCTAGTCGCGTCATTGTCTAGTGAATTTTATACAAATTTGAAGGACCTGTTCTGGGAAACTCCAACT GCATTAACTGACGCAGTTGGAGTTTACCAGGCGAGTCATGAAGGGAAGCAGCGGTCGGGTGATGGCCCCCACAATATGAAGGCGTGGGTTGATATGTATT TGTTGAGTATGTGTGATGTTTTGGTTACGAGCGGTTGGTCGACGTTCGGGTACGTGAGTCAGGGTCTCGGAGGGTTGAAGCCGTGGATTCTGCAGATTCC TGATACTCGATTCGGAGAAGGGAATCTCTGGGGACAAGCGTGTAGACGGGCGGTTTCGATGGAGCCTTGTTTTCATTTCCCTCCTGATAGAGTAAGGAAG GATTCTGATGGGTTTGTTGTGCAGTGTGAAGATGTGAATTCGGGTTTGAAGCTTGTAAATGTGGATAATTAG
AA sequence Show only first row Show all	>Lus10026128 pacid=23173250 polypeptide=Lus10026128 locus=Lus10026128.g ID=Lus10026128.BGIv1.0 annot-version=v1.0 MYILKLNSEPPSTEFQFTKTAKFRYTFLLTTLTTCTVASLLLLVIPPPINLRFSVQQLSSPDDGQSCASRNRHGSSNLKLPSPYLRSRLREYEQDHKLCE PFSELFNTTFRESVRKKKKNNDLNYSGPDDHCRYVIFSRPTNGLGNRMLSLSAAFVYALLTNRVLLVDFGPDMVDLFCEPVQNSTWLLPEDFHFGDQFYG SKSRKVDDFGEFLKNNQTTDLNVSSFLHLNLGYGYNEYDKLFYRDENQERIKRIPWLILESDQYFIPFLFLMPSFRKELDRLFPDRETIFHHIARYLFSP SNQAWGLITRFHKSYLANADQRIGLQIRVMNPEISPTPLVLKQILRCTQMEAQILPEFQLNNTIGKKTESSSSLSKAVLVASLSSEFYTNLKDLFWETPT ALTDAVGVYQASHEGKQRSGDGPHNMKAWVDMYLLSMCDVLVTSGWSTFGYVSQGLGGLKPWILQIPDTRFGEGNLWGQACRRAVSMEPCFHFPPDRVRK DSDGFVVQCEDVNSGLKLVNVDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10026128 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	5.3	0.7725
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	5.7	0.7392
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	7.5	0.7725
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	9.2	0.7725
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	9.5	0.7206
					Lus10039432 [exp]	10.6	0.7725
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	11.8	0.7725
					Lus10002332 [exp]	13.0	0.7725
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	14.0	0.7725
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	14.1	0.7157

Compare expression of checked genes

Lus10026128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.