Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12400 264 / 1e-84 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1) AT5G13860 250 / 1e-79 ELC-LIKE, ATELC-LIKE ELCH-like (.1) AT2G38830 109 / 9e-27 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008690 [exp] 645 / 0 AT3G12400 482 / 4e-170 Ubiquitin-conjugating enzyme/RWD-like protein (.1) Lus10024108 [exp] 326 / 1e-107 AT5G13860 502 / 6e-177 ELCH-like (.1) Lus10041612 [exp] 319 / 1e-105 AT5G13860 499 / 1e-176 ELCH-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034200 [exp] 534 / 0 AT5G13860 457 / 4e-161 ELCH-like (.1) Potri.003G191100 [exp] 273 / 6e-88 AT3G12400 419 / 1e-145 Ubiquitin-conjugating enzyme/RWD-like protein (.1) Potri.002G046200 [exp] 108 / 3e-26 AT2G38830 280 / 9e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF09454 [flax] [poplar] Vps23_core Vps23 core domain CL0208 [flax] [poplar] UBC PF05743 [flax] [poplar] UEV UEV domain
Representative CDS sequence Show only first row Show all	>Lus10026129 pacid=23173153 polypeptide=Lus10026129 locus=Lus10026129.g ID=Lus10026129.BGIv1.0 annot-version=v1.0 ATGTCGCCGCCACCCGTGGGCCCATCGCCGTCACCGGTAATTCAACAGTTCCTCTCCTCCGTACTCTCGCAGCGCGGCCCATCAGCCCTCCCATACAGCG AAGACACCAAGTGGCTAATCCGACAGCAGCTCCTCGCTCTCGCCGCCTCTTACCCTTCTCTCGAGCCCAAAACGGCGACGTTTACCCACAACGACGGCCG CTCCGCCAACCTGCTGCAGGCTGAAGGCACAATTCCGATGGTGTTCAAAGGAGTGACCTACAACATTCCGGTCATCATCTGGCTCATGGATTCTTACCCT CGGCACCCTCCCTGCGTCTTCGTCAATCCGACTCGCGACATGGTCATCAAGCGCCCCCACGCTCATGTCAATCCTTCTGGGTTAGTCTCCGTTCCGTATC TCCAGAGTTGGATCTACCCTAGCTCTAATTTGCTCGATCTTGTTCGTGAATTGAGCGACGTCTTTGGACGTGATCCTCCTTTGTATTCTCAGCGACGCCC TAGCTCAAACCCTAACCCTAATCCTAATCACAATCCCAATCTTACCCACATTCCTAGCCCTCGTTTTGCCACCAATCCATCCAATTTGTCGAATTCGTCA AGCTTTGGATCCATACCAGGTCCTTCCCAGCGGCCTTATCCTCCATCACCTTATGGCAGTGGAAATTCCACCCCTGCACGGCAGCACCAGACCGATGATT CAGCAGAGATTTTCAGAAGGAACGCCATTAATAAGATAGTGGAAATGGCGCATTTGGATATCTCTCAGCTGAGGACAACGAGGGAAGCAGAGATGGAGGG GTTATTCAGTGCTCAGGCTGTTCTGAGGAGGAGAGAGGAGGAGGTTAACAGGGGATTGAAGGAGTTGCAGGATGAGAAAGAAGGATTAGAGTCAGAATTA CAAACTGTGCTGATGAATTCGGATTTTTTGGAACGGTGGGTTAGGGACAATGAAGGGAAGGCGAAGGGGAATCTCGGAGATGTGGACGGTGTTTTCGAAT GCATCGACTCGCCCTCGAAGCAGATGTTGGAATGCACCGCGGCAGATTTGGCCATGGAGGATGTAGTGTATTCGTTAGACAAGGCAGTGCAGGAAGGAGC AATGCCCTTTGATCAGTATTTGAGGAATGTGAGGTTCTTGTCGAGAGAGCAGTTTTTTCATCGAGCTACTGCTGCTAAAGTTAGGGCAATACAGATGCAA TCTCAGGTAGCTAATATGGCCACTAGGATACAACAATTTGCCTCGTGA
AA sequence Show only first row Show all	>Lus10026129 pacid=23173153 polypeptide=Lus10026129 locus=Lus10026129.g ID=Lus10026129.BGIv1.0 annot-version=v1.0 MSPPPVGPSPSPVIQQFLSSVLSQRGPSALPYSEDTKWLIRQQLLALAASYPSLEPKTATFTHNDGRSANLLQAEGTIPMVFKGVTYNIPVIIWLMDSYP RHPPCVFVNPTRDMVIKRPHAHVNPSGLVSVPYLQSWIYPSSNLLDLVRELSDVFGRDPPLYSQRRPSSNPNPNPNHNPNLTHIPSPRFATNPSNLSNSS SFGSIPGPSQRPYPPSPYGSGNSTPARQHQTDDSAEIFRRNAINKIVEMAHLDISQLRTTREAEMEGLFSAQAVLRRREEEVNRGLKELQDEKEGLESEL QTVLMNSDFLERWVRDNEGKAKGNLGDVDGVFECIDSPSKQMLECTAADLAMEDVVYSLDKAVQEGAMPFDQYLRNVRFLSREQFFHRATAAKVRAIQMQ SQVANMATRIQQFAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10026129 [exp]	0	1
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10024108 [exp]	1.4	0.8629
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	7.3	0.8467
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	7.5	0.8328
AT3G19950			RING/U-box superfamily protein...		Lus10017383 [exp]	8.4	0.7937
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	14.7	0.8135
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	16.5	0.8293
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	17.0	0.8269
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	18.5	0.8020
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	18.7	0.8145
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	19.0	0.8183

Compare expression of checked genes

Lus10026129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.