Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11950 350 / 2e-124 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT2G28305 301 / 5e-105 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G37210 296 / 1e-102 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT5G06300 288 / 7e-100 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT3G53450 287 / 3e-99 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G35990 275 / 8e-95 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT4G35190 266 / 9e-91 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G03270 240 / 1e-80 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 199 / 2e-65 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026513 [exp] 297 / 4e-103 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 288 / 8e-100 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 287 / 3e-99 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 285 / 4e-98 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10003335 [exp] 279 / 5e-96 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 278 / 1e-95 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10023190 [exp] 275 / 2e-94 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 274 / 4e-94 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10024328 [exp] 272 / 3e-93 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226100 [exp] 376 / 1e-134 AT5G11950 362 / 6e-129 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.003G219300 [exp] 305 / 1e-106 AT5G11950 300 / 1e-104 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.001G005400 [exp] 303 / 1e-105 AT5G11950 268 / 5e-92 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) Potri.016G090500 [exp] 302 / 4e-105 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G060300 [exp] 297 / 4e-103 AT2G28305 315 / 3e-110 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G127400 [exp] 297 / 5e-103 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 294 / 4e-102 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 292 / 2e-101 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 286 / 4e-99 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 283 / 2e-97 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10026131 pacid=23173124 polypeptide=Lus10026131 locus=Lus10026131.g ID=Lus10026131.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGCAAGGGTAGTAGCCAATTTAAGAGAATATGTGTCTTCTGTGGAAGCAACTCTGGCAATAGAGAAATATTCAGTGAAGCCGCTGTTCAAT TGGGGGATGAACTGGTGAAGAGAAAGATAGACTTGGTATATGGTGGAGGAAGTGTTGGGCTAATGGGTTTGATATCCCAGAAGGTCCACGATGGGGGCTG TCATGTTCTTGGTGTCATTCCCAAAGCTCTGATGCCTATTGAGATCTCTGGTGAAATGGTTGGAGAAGTAAGAATAGTTGCAGATATGCACGAGCGTAAA GCTGCAATGGCCAAAGAAGCTGATGCCTTTATTGCTTTACCTGGCGGATATGGGACCATGGAAGAATTATTGGAGATGATTACATGGTCGCAACTTGGTA TCCATAAGAAACCGGTGGGACTGCTAAATGTTGAGGGATATTATGATAGTTTATTATCATTATTTGACAAAGGCGTACTAGAAGGTTTCATCAAGCCTGG TGCTCGCGGCATTGTTGTCTCTGCACCAACAGCTAGACAACTTATGGAAAACATGGAGCTATATACACCATCCCATCAACACATAGCTCCTCACGAGAGC TGGAATATGGAGCAATTGGGCAACTACCCAACACATCAGAAGAGCATATAG
AA sequence Show only first row Show all	>Lus10026131 pacid=23173124 polypeptide=Lus10026131 locus=Lus10026131.g ID=Lus10026131.BGIv1.0 annot-version=v1.0 MEEGKGSSQFKRICVFCGSNSGNREIFSEAAVQLGDELVKRKIDLVYGGGSVGLMGLISQKVHDGGCHVLGVIPKALMPIEISGEMVGEVRIVADMHERK AAMAKEADAFIALPGGYGTMEELLEMITWSQLGIHKKPVGLLNVEGYYDSLLSLFDKGVLEGFIKPGARGIVVSAPTARQLMENMELYTPSHQHIAPHES WNMEQLGNYPTHQKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	0	1
AT5G05330			HMG-box (high mobility group) ...		Lus10000418 [exp]	1.4	0.9554
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	2.4	0.9574
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	5.7	0.9443
					Lus10017210 [exp]	8.0	0.9388
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	8.9	0.9443
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	10.7	0.9297
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	10.7	0.9425
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10021675 [exp]	11.2	0.9342
AT3G07440			unknown protein		Lus10020404 [exp]	12.2	0.9359
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	13.7	0.9388

Compare expression of checked genes

Lus10026131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.