Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12390 205 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 191 / 4e-63 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1) AT4G10480 187 / 1e-61 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT3G49470 181 / 8e-59 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT1G33040 172 / 2e-55 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008687 [exp] 245 / 1e-81 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10041610 [exp] 232 / 3e-79 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10024109 [exp] 229 / 6e-79 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10032927 [exp] 179 / 4e-58 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10015579 [exp] 179 / 4e-58 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034400 [exp] 239 / 4e-82 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 239 / 6e-82 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 221 / 1e-74 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.015G003300 [exp] 186 / 7e-61 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 172 / 2e-55 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10026133 pacid=23173149 polypeptide=Lus10026133 locus=Lus10026133.g ID=Lus10026133.BGIv1.0 annot-version=v1.0 ATGTTGAAGTTGGGAATGAAGCCCATGACCGGCGTCAGTCGAGTTACTGTCAAGAAGAGCAAGAATATCTTGTTCGTGATCTCAAAACCGGACGTGTTCA AGAGCCCAACATCGGACACATACATCATCTTCGGAGAGGCCAAGATCGAAGACATCAGCTCGCAGCTACAAAGCCAAGCAGCAGAGCAGTTCAAGGCCCC TGATCTGAGCCATATGATCTCGAAACCAGAGACCTCTGGCATGGCTCAGGACAATGAGGAGGTGGATGAAACTGGAGTCGAATCAAAGGACATTGAATTA GTTATGACACAGGCGGGAGTCTCGAGGCCTAAAGCCGTGAGGGCTCTCAAGGCTGCAGATGGGGACATTGTATCTGCAATCATGGAACTTACCACCTGA
AA sequence Show only first row Show all	>Lus10026133 pacid=23173149 polypeptide=Lus10026133 locus=Lus10026133.g ID=Lus10026133.BGIv1.0 annot-version=v1.0 MLKLGMKPMTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDISSQLQSQAAEQFKAPDLSHMISKPETSGMAQDNEEVDETGVESKDIEL VMTQAGVSRPKAVRALKAADGDIVSAIMELTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12390			Nascent polypeptide-associated...		Lus10026133 [exp]	0	1
AT3G59650			mitochondrial ribosomal protei...		Lus10006114 [exp]	1.0	0.9005
AT5G20180			Ribosomal protein L36 (.1.2)		Lus10019412 [exp]	2.6	0.8232
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10033312 [exp]	3.7	0.7877
AT2G31490			unknown protein		Lus10027603 [exp]	3.9	0.8332
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	5.7	0.8581
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	6.9	0.7971
AT1G11240			unknown protein		Lus10018438 [exp]	6.9	0.8489
AT1G05205			unknown protein		Lus10027173 [exp]	7.7	0.8521
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	8.5	0.8174
AT1G47278			unknown protein		Lus10040837 [exp]	9.8	0.7444

Compare expression of checked genes

Lus10026133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.