Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39510 255 / 3e-87 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT1G26670 236 / 1e-79 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT3G29100 170 / 3e-54 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT5G39630 148 / 2e-45 Vesicle transport v-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021624 [exp] 259 / 4e-89 AT5G39510 326 / 2e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10034696 [exp] 259 / 1e-87 AT5G39510 318 / 5e-110 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10000565 [exp] 221 / 8e-74 AT5G39510 178 / 3e-56 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10036788 [exp] 221 / 1e-73 AT1G26670 243 / 3e-81 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10037141 [exp] 218 / 1e-72 AT1G26670 324 / 1e-113 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10021629 [exp] 116 / 2e-30 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115700 [exp] 267 / 5e-92 AT5G39510 325 / 5e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.017G087700 [exp] 265 / 3e-91 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.008G091000 [exp] 248 / 1e-84 AT1G26670 327 / 5e-115 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.010G164300 [exp] 246 / 7e-84 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus CL0147 [flax] [poplar] Traffic PF05008 [flax] [poplar] V-SNARE Vesicle transport v-SNARE protein N-terminus
Representative CDS sequence Show only first row Show all	>Lus10026134 pacid=23173309 polypeptide=Lus10026134 locus=Lus10026134.g ID=Lus10026134.BGIv1.0 annot-version=v1.0 ATGAGTCAGGTATTCGAAGGATATGAGCGCCAATACTGTGAGCTTTCCGCCAATTTGTCGCGGAAATGCACTTCCGCCAGTGCCCTCGATGGAGAGCAGA GGAAACAGAAAGTTTCTGAGATTAAAGCTGGATTGGATGATGCTGATGGTTTGATTAGGAAAATGGACCTGGAAGCAAGGAGCTTACCGCCAAATATAAA GGGTTCCCTTCTTGCAAAGATTCGGGAGTACAAAACTGATCTGAACAATTTAAAGAGTCAAGTCAAGAAAATGTCATCCTCTAATGCCATTCAGGCTTCC AGAGATGAATTGCTCGAATCTGGAATGGCTGATGCAAAGATGGTGGCAACAGACCAACGAGGCAGGCTATTGATGTCAACGGAGCGGCTTAACCAGTCCA CGGACAGAATCAAGGACAGCAGAAGAACAATGCTTGAAACAGAAGAGCTAGGGGTGTCAATCCTTCAAGATCTGCATCAGCAGCGCCAGGCTCTCCTACA TGCCAACAGCACGGTACGTTGA
AA sequence Show only first row Show all	>Lus10026134 pacid=23173309 polypeptide=Lus10026134 locus=Lus10026134.g ID=Lus10026134.BGIv1.0 annot-version=v1.0 MSQVFEGYERQYCELSANLSRKCTSASALDGEQRKQKVSEIKAGLDDADGLIRKMDLEARSLPPNIKGSLLAKIREYKTDLNNLKSQVKKMSSSNAIQAS RDELLESGMADAKMVATDQRGRLLMSTERLNQSTDRIKDSRRTMLETEELGVSILQDLHQQRQALLHANSTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10026134 [exp]	0	1
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	13.5	0.9466
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	19.4	0.9460
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	24.8	0.9448
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	26.8	0.9415
AT1G72490			unknown protein		Lus10037689 [exp]	31.0	0.9414
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	35.6	0.9410
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	38.4	0.9407
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	41.3	0.9407
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	43.1	0.9402
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	44.0	0.9391

Compare expression of checked genes

Lus10026134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.