Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008678 [exp] 272 / 3e-90 ND / Lus10041676 [exp] 102 / 5e-25 ND / Lus10018646 [exp] 95 / 4e-23 ND / Lus10041677 [exp] 95 / 2e-22 ND / Lus10028987 [exp] 84 / 2e-18 ND / Lus10010387 [exp] 77 / 7e-17 ND / Lus10039442 [exp] 79 / 2e-16 ND / Lus10008679 [exp] 71 / 4e-14 ND / Lus10016944 [exp] 60 / 1e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026135 pacid=23173156 polypeptide=Lus10026135 locus=Lus10026135.g ID=Lus10026135.BGIv1.0 annot-version=v1.0 ATGAGCATGTCCCGGTTTGTAGTGAACTCCAACTCCATGTTCCTTTGCGGCACGACCGACGGCGCCGTAACAGTGGTTGACGCCGGCACCGACCTGAACA CCCCGATCTACTCCTCCGACAACTGGAAGATAACGGCAGTGGCCACCTCGGTGGCAGCAGGAACGAATATGTACAGAGCATTGGAAATATTCGGCAAGGT AATCGAAGGCGAAAGCCTAAACAAATTATGCCAAGATCTGTTGAATTCTCAGGTCTTGGCGAATCGCGACGGCTACCAGGTGAGGTACTTGGGAGCGGAC GGCAGGGTCAACGGTTGCGAGGGGTTTGTGATCGGGAGCAATTACTTGATGAAGCTGAACAACCTGTTCGGGTGGGGGAAATACGGAGTGAAGTCGCCGG AGGGGAGGATCAGAACGGTGTGGAACAGGTACGACGTGAGCATCGGGGAGGCGGTGGTGGATTATGCGGCGGCGGAGGTGAAGGCGGGGGAAATGAAATC AGAGTTGGAGAAGCGGGCGGAGGAGTTGAGGGAATGGGAAAGGAGGGCGGCGGAGAAGGAAGAGATTTTGGGGCATTACAAGGGGATTCTGGAGGTTAAA AATGAGCTTACGAAGGAGATGGAAATTGGGAAGAATCGGCTTAAGGGAGTAGTTGAGGAACAGAGGAGAGTTATTAAGCAGAAGGAAGTTGAGATTCAAG GTTTGATGAAGACGAATGGGATGATGATTAATGGCGGTGATGAGCTGAAGGAGAAAGCGGTGGTGGATGAAAATGGTGATGATGATGATTTGAAGGCAGC CATGGCTTCTTGTACGATGAGTGATTTGAAGAAGGCAATTGGTGCCACTAACAGGGTTTTGTTTGTTAATCTACTACTAGTTGTTTTCTTGCTTTTGGGT TTAATTTTTGTGCGTATAGGTTTACGTGAATAG
AA sequence Show only first row Show all	>Lus10026135 pacid=23173156 polypeptide=Lus10026135 locus=Lus10026135.g ID=Lus10026135.BGIv1.0 annot-version=v1.0 MSMSRFVVNSNSMFLCGTTDGAVTVVDAGTDLNTPIYSSDNWKITAVATSVAAGTNMYRALEIFGKVIEGESLNKLCQDLLNSQVLANRDGYQVRYLGAD GRVNGCEGFVIGSNYLMKLNNLFGWGKYGVKSPEGRIRTVWNRYDVSIGEAVVDYAAAEVKAGEMKSELEKRAEELREWERRAAEKEEILGHYKGILEVK NELTKEMEIGKNRLKGVVEEQRRVIKQKEVEIQGLMKTNGMMINGGDELKEKAVVDENGDDDDLKAAMASCTMSDLKKAIGATNRVLFVNLLLVVFLLLG LIFVRIGLRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026135 [exp]	0	1
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	25.3	0.8862
AT3G53400			unknown protein		Lus10019932 [exp]	30.3	0.8867
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	44.0	0.8841
AT5G55980			serine-rich protein-related (....		Lus10011094 [exp]	61.8	0.8822
AT5G38200			Class I glutamine amidotransfe...		Lus10039726 [exp]	65.2	0.8545
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	68.4	0.8635
AT4G03230			S-locus lectin protein kinase ...		Lus10018512 [exp]	79.1	0.8627
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	89.1	0.8729
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	108.2	0.8457
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	110.2	0.8649

Compare expression of checked genes

Lus10026135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.