Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03773 97 / 7e-25 HSP20-like chaperones superfamily protein (.1.2) AT4G02450 99 / 1e-24 HSP20-like chaperones superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008680 [exp] 285 / 6e-95 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10000340 [exp] 184 / 3e-57 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10024119 [exp] 175 / 1e-55 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10010669 [exp] 96 / 4e-24 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2) Lus10002623 [exp] 93 / 3e-23 AT3G03773 165 / 2e-53 HSP20-like chaperones superfamily protein (.1.2) Lus10020270 [exp] 91 / 3e-20 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199700 [exp] 135 / 5e-39 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2) Potri.002G061500 [exp] 132 / 3e-38 AT4G02450 123 / 4e-35 HSP20-like chaperones superfamily protein (.1.2) Potri.019G038550 [exp] 97 / 6e-25 AT3G03773 197 / 5e-66 HSP20-like chaperones superfamily protein (.1.2) Potri.013G062600 [exp] 94 / 1e-23 AT3G03773 191 / 3e-63 HSP20-like chaperones superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain
Representative CDS sequence Show only first row Show all	>Lus10026136 pacid=23173135 polypeptide=Lus10026136 locus=Lus10026136.g ID=Lus10026136.BGIv1.0 annot-version=v1.0 ATGGAGGCTTGTACTCCCATGACGGCGGTACCTCGACCAACGCTGCAAGGGGCGGTTCTTCCTCCACAGTCACTTCAAGAGAAAGCCTTTGGGAGGTTCT TGCATATTCGAAAGCTGGAGGAAATAGGAGATCGACACCCAATTTTGAAGTGGGCACAGAGAAGTGATAAAATCTTTCTAACTCTGGAGTTGCCAGACGC TAAAGATGCCAAAATCAAGCTTGAACCGGAAGGAAAATTTATCTTTTCAGCCAATAAAGATGGGGTTGCATATGATTTGGATCTTGAGCTGTTCGACAAA GTCAATGTGGAGGAGAGCAAGTACAACATCGGTGTGAGAAGCATTGTATATGTCATTGAGAAAGCTGAGAGTAAGTGGTGGACTCGGTTGATTAAACAAG AAGGAAAGGCTCCTGCTTTCCTGAAAGTCGACTGGGATAAATGGGTCGACGAAGATGAGGAAAATGGTAAAGCAGCATTTGATTCCTATGTTGGCGGTGC TGATGCTGCTGGTGGCATGAACTTTGATGGCATGGATTTCTCAAAGTTCGGAGGCATGCCCGGTATGGGTGGCATGCCCGGAATGGGTGGCATGCCCGGA ATGGGAGGCATGCCCGGTATGGGGGGAATGGGAGGCATGATGCCTGGAATGGGTGGTATGCCAGGAATGGGAGGTGATTTCGGCGATTTCAACATGCCGG AAGATGACGATGAGGATGATGATGAAGAGGAGGTAACAAAACCAGAAGCTAAAGAGGCAGAAGGAACCAGTAAATCTGCAGCCCCCGAGGATGTGAAGGA TGCGAAGGCTTGA
AA sequence Show only first row Show all	>Lus10026136 pacid=23173135 polypeptide=Lus10026136 locus=Lus10026136.g ID=Lus10026136.BGIv1.0 annot-version=v1.0 MEACTPMTAVPRPTLQGAVLPPQSLQEKAFGRFLHIRKLEEIGDRHPILKWAQRSDKIFLTLELPDAKDAKIKLEPEGKFIFSANKDGVAYDLDLELFDK VNVEESKYNIGVRSIVYVIEKAESKWWTRLIKQEGKAPAFLKVDWDKWVDEDEENGKAAFDSYVGGADAAGGMNFDGMDFSKFGGMPGMGGMPGMGGMPG MGGMPGMGGMGGMMPGMGGMPGMGGDFGDFNMPEDDDEDDDEEEVTKPEAKEAEGTSKSAAPEDVKDAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	0	1
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	1.0	0.8762
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	2.4	0.8196
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	6.2	0.7928
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	7.2	0.7170
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	7.2	0.7826
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	7.3	0.7529
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	12.4	0.7280
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	17.2	0.7429
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10004478 [exp]	17.5	0.7739
AT3G51010			unknown protein		Lus10028346 [exp]	18.1	0.6879

Compare expression of checked genes

Lus10026136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.