Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04940 728 / 0 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 726 / 0 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT1G17770 481 / 7e-162 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 457 / 7e-152 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G35160 335 / 3e-104 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT4G13460 328 / 4e-103 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G22740 330 / 3e-102 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G33290 317 / 8e-99 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G13960 272 / 3e-82 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G05900 178 / 1e-50 SUVH10, SDG11 SU\(VAR\)3-9 HOMOLOG 10, SET domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008681 [exp] 1107 / 0 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 990 / 0 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 325 / 3e-98 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 323 / 1e-97 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 314 / 2e-96 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008680 [exp] 302 / 3e-96 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10023714 [exp] 310 / 4e-96 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10031984 [exp] 302 / 1e-92 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 300 / 7e-92 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036800 [exp] 822 / 0 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 810 / 0 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 614 / 0 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 596 / 0 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G083100 [exp] 350 / 3e-108 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.008G173100 [exp] 338 / 1e-106 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 337 / 5e-106 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.002G237950 [exp] 302 / 6e-93 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 278 / 1e-83 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 256 / 5e-75 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10026137 pacid=23173234 polypeptide=Lus10026137 locus=Lus10026137.g ID=Lus10026137.BGIv1.0 annot-version=v1.0 ATGGAAGGTGTTTCAACAGCGGCCTTCATTGCTGCTCGTAGTACTCCAGGTTCCTCGGATAAATCAAGGGTTTTAGATGTGAAACCCCTCCGTACTCTGG TGCCCGTGTTTCCATCAAGTCCACAAGGCCCTCCATTTGTCTGTTCACCTCCATTTGGCCCTTACCCACCAGGGTTTGCTCCATTTTATCCCTTTGCTCC TCAGGACACCAACCAGGAACCCCAAACTCCAGCACCAGTTCGTTCATTCCCAGCTCCTGAATCCAGCCCAGTAGAAAATGGAGGAGGTGATCTCTCTGAT CCTCCAGCGAAGCGTTCAGTTGGACGACCTGCCAAGGGTTCCCCAAGTCAGAAGAAGGTAAAAAAGTCCCCCCCAGATGACTTTTTGCTACCTGTTCCAA GTAGTAGTTTTGTTCTAGGGATCAGTCCTGCTCAAAAAGAGGATGGTGATCGGAGTGTTGTTGATAGTCTTCTAATGAGACTCGATGCTCTAAGGAGAAA AATTAGTCAGCTAGAGGATGTAAAGGACGCGCAGCATGGCAATAGCAAGGGTGCTCACTTAAAAGCTTGCGCTATCTTGAATAGCAATAATGTAAGGACG AACTCTAGGAAGAGAACGGGAGTGGTTCCTGGAGTGGAGATTGGTGATATTTTCTTTTTCCGCATGGAGATGTGTTTGGTTGGATTGCATGCCCAGACAA TGGCTGGCATAGATTATATGATCGTAAGGGATGATTTAGAGGAAGAACCACTCGCTACAAGCATTGTTTCATCTGGTAACTATGACAATGCAGCAGATGA TTCGGATGTTCTTATCTACAGTGGCCATGGAGGTAATTCCACCAGCAAAAAGGGAGCATCTGATCAGAAACTTGAGAGGGGTAATCTTGCTCTGGAGAGG AGTCTACGCAGGGGAAGCCAGGTCCGTGTCATCCGAGGTATGAAAGATGCCAACAATACAACGACAAAGGTTTATATTTATGATGGCATTTACACGATTA AGGAGTCATGGATGGAGAAGGCGAATACTGGTTGCAATATATTCAAGTACAAGCTTGTTAGGATGCCTGGTCAACCTGATGCCTTTTCTCTCTGGAAATC AATTGAGAAATGGAAGGAGGGAGTTTCTTCCAGAATGGGGTTGATTCTTCCCGACCTAACTTCGGGGGCTGAAAGTTTGCCTGTTTCACTTGTAAATGAG GTTGACGAAGAAAGAGGACCTGCTTACTTCACATATCTTGCATCTGTGAAGTACTCCAAGTCATTTAAACTATCTCAGCCTTCTTTAGGGTGCACCTGCT GTAAGGCATGTCAAGCTAATGACGGAAACTGCTCTTGCATGAGATTAAATGGCAACTTGAGTCCATATATCGGTAACGGGACTCTTGTTAGTAGGAAGCC ATTGGTCTATGAATGTGGCTCTACATGTTCATGCATTGCTAATTGCAAAAACCGTGTGTCTCAAACTGGTTTGAAACTTCACCTAGAAGTTTTCAAAACA AAGGGTAAAGGCTGGGGTTTAAGGTCATGGGACCCCATTCGTGCTGGTGGATTTATATGTGTATATGCCGGTGAAGCGACAGAAAAGGTTGGATCAGCAC AAAATGGTGAAGAAAGTCACGGAGATGACTATGTCTTTGATACAACCCGCGTATATGACTCGTTCAGGTGGAATTGTGAACCTGGGTTGATAGAAGAGGA TCTTAATGACAGTAATGAACAATATGAGATTCCATATCCGCTCGTCATAAGTGCAAAAAATGTTGGAAATGTAGCTCGGTTTATGAATCACAGTTGTGAG CCCAACACATTCTGGCAGCCAGTTATGTACGAGAACAACAATGAAACTCATATCAATATCGCTTTCTTTGCAATGAGACATATTCCGCCAATGACGGAGT TGACCTTTGATTATGGGATATCCCAGTCTCGTGATGGTGGCAATAGTAGTGCATCACATGGAAGGAAGAAATGTTTATGTGGATCGTCAGGGTGCAAAGG TTATTTTGGCTGA
AA sequence Show only first row Show all	>Lus10026137 pacid=23173234 polypeptide=Lus10026137 locus=Lus10026137.g ID=Lus10026137.BGIv1.0 annot-version=v1.0 MEGVSTAAFIAARSTPGSSDKSRVLDVKPLRTLVPVFPSSPQGPPFVCSPPFGPYPPGFAPFYPFAPQDTNQEPQTPAPVRSFPAPESSPVENGGGDLSD PPAKRSVGRPAKGSPSQKKVKKSPPDDFLLPVPSSSFVLGISPAQKEDGDRSVVDSLLMRLDALRRKISQLEDVKDAQHGNSKGAHLKACAILNSNNVRT NSRKRTGVVPGVEIGDIFFFRMEMCLVGLHAQTMAGIDYMIVRDDLEEEPLATSIVSSGNYDNAADDSDVLIYSGHGGNSTSKKGASDQKLERGNLALER SLRRGSQVRVIRGMKDANNTTTKVYIYDGIYTIKESWMEKANTGCNIFKYKLVRMPGQPDAFSLWKSIEKWKEGVSSRMGLILPDLTSGAESLPVSLVNE VDEERGPAYFTYLASVKYSKSFKLSQPSLGCTCCKACQANDGNCSCMRLNGNLSPYIGNGTLVSRKPLVYECGSTCSCIANCKNRVSQTGLKLHLEVFKT KGKGWGLRSWDPIRAGGFICVYAGEATEKVGSAQNGEESHGDDYVFDTTRVYDSFRWNCEPGLIEEDLNDSNEQYEIPYPLVISAKNVGNVARFMNHSCE PNTFWQPVMYENNNETHINIAFFAMRHIPPMTELTFDYGISQSRDGGNSSASHGRKKCLCGSSGCKGYFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10026137 [exp]	0	1
AT3G22270			Topoisomerase II-associated pr...		Lus10039002 [exp]	1.0	0.9056
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	9.7	0.8708
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10011461 [exp]	13.4	0.8053
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	18.1	0.8811
AT1G73460			Protein kinase superfamily pro...		Lus10031329 [exp]	18.9	0.8727
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	24.4	0.8757
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10020393 [exp]	35.7	0.8389
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	37.2	0.8555
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	41.7	0.8572
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	42.7	0.8340

Compare expression of checked genes

Lus10026137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.