Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 157 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 137 / 5e-42 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 135 / 2e-39 ATSEH soluble epoxide hydrolase (.1) AT2G26750 134 / 2e-39 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 135 / 4e-39 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 126 / 5e-36 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 114 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 43 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 40 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026140 [exp] 216 / 7e-72 AT4G02340 329 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 205 / 6e-67 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 192 / 1e-61 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 181 / 1e-57 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 167 / 6e-52 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 143 / 1e-42 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 142 / 2e-42 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 136 / 8e-40 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 134 / 3e-39 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 175 / 3e-55 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 172 / 7e-54 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 163 / 2e-50 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 148 / 1e-44 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 146 / 1e-43 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 145 / 3e-43 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 144 / 3e-43 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 124 / 2e-35 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127101 [exp] 108 / 1e-31 AT4G02340 155 / 7e-48 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 111 / 2e-30 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10026138 pacid=23173297 polypeptide=Lus10026138 locus=Lus10026138.g ID=Lus10026138.BGIv1.0 annot-version=v1.0 ATGGAGAAAATAGAGCACACAACGGTACCAGCAAACGGCCTAAACATCCACGTGGCGTCCACCGGCGCCGGAACCCGGACAATCCTCTTCCTCCACGGAT TCCCACAGCTGTGGTACTCGTGGCGGCACCAGCTCATCTCCCTCTCCTCCTTCGGCTACCGCTGCATCGCTCCCGACCTCCGCGGCTACGGCGACACTAC GGTTGACGTCGGCGCGTCTCCTTCCTCCTCCGCCGCCGCCTTCACTTCCTTCCATGTGGTTGGAGATCTCGTCGCCCTCCTTGACGCTCTGAAGATCCAG CAGGTATTCTTGGTGGGCCACGACTGGGGGGCCACCATAGCGTGGCATTTCTGTCTTTTCCGGCCGGATAGGGTCGAGGCTCTGGTCAACACCAGTGTCC CGTTTCGTCCCAGGTGA
AA sequence Show only first row Show all	>Lus10026138 pacid=23173297 polypeptide=Lus10026138 locus=Lus10026138.g ID=Lus10026138.BGIv1.0 annot-version=v1.0 MEKIEHTTVPANGLNIHVASTGAGTRTILFLHGFPQLWYSWRHQLISLSSFGYRCIAPDLRGYGDTTVDVGASPSSSAAAFTSFHVVGDLVALLDALKIQ QVFLVGHDWGATIAWHFCLFRPDRVEALVNTSVPFRPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026138 [exp]	0	1
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10017615 [exp]	3.2	0.9223
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	5.9	0.9279
AT2G43610			Chitinase family protein (.1)		Lus10001772 [exp]	14.1	0.9207
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	17.7	0.9087
AT3G03000			EF hand calcium-binding protei...		Lus10004539 [exp]	20.0	0.9082
					Lus10041024 [exp]	22.3	0.9062
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	23.5	0.9060
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	25.8	0.9026
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	28.1	0.9024
					Lus10009618 [exp]	29.7	0.9024

Compare expression of checked genes

Lus10026138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.