Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 301 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 233 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 224 / 8e-72 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 210 / 9e-67 ATSEH soluble epoxide hydrolase (.1) AT2G26750 205 / 5e-65 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 192 / 4e-60 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 176 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 47 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 42 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008683 [exp] 394 / 4e-139 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 344 / 3e-119 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 291 / 2e-98 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 286 / 6e-97 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 286 / 8e-97 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 261 / 2e-86 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 254 / 8e-84 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 244 / 5e-80 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 244 / 7e-80 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 315 / 7e-108 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 307 / 5e-105 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 291 / 4e-98 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 256 / 8e-85 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 246 / 1e-80 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 243 / 1e-79 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 237 / 3e-77 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 197 / 1e-61 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 149 / 2e-44 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 146 / 5e-42 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10026140 pacid=23173260 polypeptide=Lus10026140 locus=Lus10026140.g ID=Lus10026140.BGIv1.0 annot-version=v1.0 ATGGAGAAGATAGAGCACACGACGGTGGCGACAAACGGCATAAACATGCACGTGGCGTCCATCGGAGCCGGCCCGGCCACCATCCTGTTCCTCCACGGCT TCCCGGAGCTATGGTACACGTGGCGCCACCAGATGCTGTCCTTGTCATCCCAGGGCTTCCGCTGCATCGCTCCCGACCTCCGCGGCTACGGCGACACTAC GGTTGACGTCGGCGCGTCTCCTTCCTCCTCCGCCGCCGCCTTCACTTCCTTCCATGTGGTTGGAGATCTCGTCGCCCTCCTTGACGCTCTGAAGATCCAG CAGGTATTCTTGGTGGGCCACGACTGGGGGGCCACCATAGCGTGGCATTTCTGTCTTTTCCGGCCGGATAGGGTCGAGGCTCTGGTCAACACCAGTGTCC CGTTTCGTCCCAGGCACAACTCGCCGGTGTCGCCGTTGCAGGGTTTGAGGGCAGTGCTGGGAGACGACTTCTACATGTGTAGGTTCCAGCAGCCCGGGGA GGTCGAGGCTGAATTTGCCGAGGTTGATACGGGGAAGCTTCTTTTGAAGTTTTTCGGGGACCGGAGCCCCGACGCGCCGTGTGTTCCTAAGGAGGTCGGG TTCGGAGGGTGGCCGGATCCTCCCTGTTTGCCGTTGTGGCTGACCCAGGAGGACGTTGACTATTATGCCGGCAAGTTTGACAAGACCGGCTTCACCGGTG GACTCAACTACTACCGAGCTATTGATCTGTACGTATACGTATACAAATATTATACCATTCTACTCAACTTTGGTTTATATGGTTTTAGAAAAAAAATTTA A
AA sequence Show only first row Show all	>Lus10026140 pacid=23173260 polypeptide=Lus10026140 locus=Lus10026140.g ID=Lus10026140.BGIv1.0 annot-version=v1.0 MEKIEHTTVATNGINMHVASIGAGPATILFLHGFPELWYTWRHQMLSLSSQGFRCIAPDLRGYGDTTVDVGASPSSSAAAFTSFHVVGDLVALLDALKIQ QVFLVGHDWGATIAWHFCLFRPDRVEALVNTSVPFRPRHNSPVSPLQGLRAVLGDDFYMCRFQQPGEVEAEFAEVDTGKLLLKFFGDRSPDAPCVPKEVG FGGWPDPPCLPLWLTQEDVDYYAGKFDKTGFTGGLNYYRAIDLYVYVYKYYTILLNFGLYGFRKKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	0	1
AT3G06270			Protein phosphatase 2C family ...		Lus10021952 [exp]	2.2	0.8489
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	4.2	0.8321
AT2G26970			Polynucleotidyl transferase, r...		Lus10037420 [exp]	7.1	0.8257
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	9.7	0.7714
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	24.0	0.7929
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10019949 [exp]	25.1	0.7740
AT4G28100			unknown protein		Lus10018524 [exp]	26.5	0.7970
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	27.9	0.8095
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10022409 [exp]	30.0	0.7857
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	40.9	0.7727

Compare expression of checked genes

Lus10026140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.