Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 419 / 6e-148 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 332 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 328 / 4e-112 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 307 / 3e-104 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 304 / 8e-103 ATSEH soluble epoxide hydrolase (.1) AT2G26750 302 / 4e-102 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 248 / 9e-81 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 51 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 47 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 46 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008684 [exp] 547 / 0 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 463 / 2e-165 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 447 / 5e-159 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 397 / 2e-139 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 359 / 2e-124 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 359 / 3e-124 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10026140 [exp] 344 / 2e-119 AT4G02340 329 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 343 / 3e-118 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 339 / 1e-116 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 438 / 9e-156 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 429 / 3e-152 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 390 / 2e-136 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 362 / 2e-125 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 358 / 5e-124 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 355 / 9e-123 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 349 / 1e-120 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 269 / 6e-89 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 200 / 3e-62 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 192 / 1e-60 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10026141 pacid=23173138 polypeptide=Lus10026141 locus=Lus10026141.g ID=Lus10026141.BGIv1.0 annot-version=v1.0 ATGGAGAAGATAGAGCACACGACGGTGGCGACAAACGGCATAAACATGCACGTGGCGTCCATCGGAGCCGGCCCGGCCACCATCCTGTTCCTCCACGGCT TCCCGGAGCTATGGTACACGTGGCGCCACCAGATGCTGTCCTTGTCATCCCGGGGCTTCCGCTGCATCGCTCCCGACCTCCGCGGCTACGGCGACACCGA CGTCCCTTCCGGCGGCGCCGACAAGTACACGTCGTTCCACGTGGTCGGAGATCTGGTCGGGCTTCTCGACGCGCTGGGGATAGAGCGAGTGCTGCTTGTC GGGCATGATTGGGGCGCCATCATCGCCTGGCACTTCTGCCTGTTCCGGCCCGACAGGATCAAGGCGCTGGTGAATACGAGCGTGCCGTTCATGCCACGTC ACCCGAAGATGTCGTTTCTCGGCGGGTTGAGGGCGGTGTTCGGCGACGACTTCTATATGTGCAGGTTTCAGGATCCCGGGGAGGCGGAAGAAGACTTCGG AGCAGTGGAGACAGAGAAGTTAATGGCCAAAATATTGTCGTCGAGGAACTCGAACCCGCCGTGCTTGCCCAAAGAGATAGGTTCGAGAGCGATACCCGAT CCCCCGTCTCTCCCGAACTGGCTTTCCGAACAAGACATCCAATACTTCGCCTCCAAATTTGACAAGACCTCCTTCACCGGCGCTCTCAACTACTACCGCG CTATCGACCTGACGTGGGAGCTGATGGGGCCATGGACCGGCGCAAAAGTTCTGGTGCCGACCAAGTTCATAGTCGGAGAGCTCGACCTGACATTGAAGTT TCCTAGGATGGACGAGTATGTCGTCAAGGGCGGAATGAAACGAGACGTGCCGTTGCTCGAAGAAGTGGTGGTGTTGAAGGGCGTGGCTCACTTCCTTAAC CAAGAGAGCCCCGACGAGGTCACCAAACACATCTACGACTTCTTCAAGGACAAGTAA
AA sequence Show only first row Show all	>Lus10026141 pacid=23173138 polypeptide=Lus10026141 locus=Lus10026141.g ID=Lus10026141.BGIv1.0 annot-version=v1.0 MEKIEHTTVATNGINMHVASIGAGPATILFLHGFPELWYTWRHQMLSLSSRGFRCIAPDLRGYGDTDVPSGGADKYTSFHVVGDLVGLLDALGIERVLLV GHDWGAIIAWHFCLFRPDRIKALVNTSVPFMPRHPKMSFLGGLRAVFGDDFYMCRFQDPGEAEEDFGAVETEKLMAKILSSRNSNPPCLPKEIGSRAIPD PPSLPNWLSEQDIQYFASKFDKTSFTGALNYYRAIDLTWELMGPWTGAKVLVPTKFIVGELDLTLKFPRMDEYVVKGGMKRDVPLLEEVVVLKGVAHFLN QESPDEVTKHIYDFFKDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	0	1
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	1.0	0.8277
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	4.9	0.7341
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	9.7	0.7714
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10026497 [exp]	14.5	0.6306
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	15.7	0.6938
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	17.7	0.6205
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011234 [exp]	24.7	0.6832
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	26.2	0.6092
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	42.8	0.6749
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013652 [exp]	44.3	0.6335

Compare expression of checked genes

Lus10026141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.