Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51680 817 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G21240 812 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 687 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 665 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 406 / 3e-136 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 363 / 1e-119 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20510 359 / 7e-118 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 350 / 3e-114 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 344 / 5e-112 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 333 / 1e-107 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008677 [exp] 1038 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 942 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 929 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10016135 [exp] 403 / 7e-135 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 399 / 2e-133 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 367 / 4e-121 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 360 / 9e-118 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10026544 [exp] 352 / 3e-115 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 353 / 6e-115 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036900 [exp] 832 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 832 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 813 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 798 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 714 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.001G055700 [exp] 403 / 3e-134 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G112800 [exp] 395 / 4e-132 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 394 / 2e-131 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 381 / 3e-126 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 367 / 6e-121 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10026143 pacid=23173216 polypeptide=Lus10026143 locus=Lus10026143.g ID=Lus10026143.BGIv1.0 annot-version=v1.0 ATGGAGTCCAACCAGCAGCAAACTCCGGCGACGTCGGCCGGTGAGGAATTCATTTTCCGGTCGAAATTGCCGGACATCGACATCCCCAACCACCTCCCCC TCCACTCCTACATCTTCCAGAACATCTCCAACCACGCCACCCGCCCTTGCCTCATCAATTCCGTCACGGGAGAAGTCTACACCTACGCCGACGTCCACCT CACCGCCAGACGAGTCGCTTACGGGCTGGACAAGCTGGGGATCCGTCAGGGAGATGTGATTATGCTCTTGCTCCCGAACTGCCCCCAATTCGTCCTCGCC TTCCTCGGGGCTTCCTTCCGCGGAGCAATCGCCACCGCCGCCAACCCGTTCTTCACCCCCGCCGAGGTCGCCAAGCAGGCCAAGGCCTCCGGCGCGAAAT TGGTCATCACTCAGGCCGCCTTCGCTGATAAACTCAAGGATCTGGCTGCTGACGACGCGATTAAGGTGATGTGCGTCGATTCACCTCCCGACTGGTGCTT GCATTTCTCCCAATTGAGTGAATCCGATGACTCAGCGGTGGAGGTAGAGATCAGCTCCGATGACGTGGTGGCGCTGCCGTACTCATCGGGAACCACCGGG TTGCCAAAGGGAGTGATGCTGACTCACAAGGGGCTGGTGACGAGCGTGGCGCAGCAGGTCGACGGCGAGAATCCGAATCTGTACTTCAACTCGGAGGATG TGATACTGTGCGTTCTGCCGATGTTCCACATCTACGCGCTGAACTCGATCATGCTGTGCGGGTTGCGGGTCGGGGCGGCGATCCTGATCATGCCGAAGTT CGAGATCGGACCTCTTCTGGAGCTGATTCAGAGGTACCGTGTCACCATAGCGCCGATGGTTCCTCCGGTGGTGCTGGCGATTGCGAAGTCGCCGGACACG GAGAAGTACGACCTTTCGTCGATTCGGATGTTGAAATCTGGTGCGGCGCCGTTGGGGAAGGAACTTGAAGACGCCGTGGGAAACAAGTTCCCGAATGCGC GACTCGGCCAGGGATACGGAATGACGGAGGCCGGACCAGTGCTGTCGATGTGCTTGGCATTCGCCAAGGAACCATTCGAAATCAAAGCTGGTTCCTGTGG TACCGTCGTCAGGAATGCAGAAATGAAGATCGTCGATCCCGACACAGGATCCTCCCTCCCCAGAAACCAGCGGGGAGAGATTTGCATCAGAGGCCATCAG ATCATGAAGGGATACCTGAATGACCCGGAATCGACATCAAGAACGATAGACCAACAAGGGTGGCTACACACAGGGGACATTGGCTATATCGACGGCGATG ACGAGCTATTCATCGTGGATCGGTTGAAGGAGATCATCAAGTACAAAGGATTCCAGGTTGCCCCTGCTGAATTCGAAGCCTTGCTCATCGCTCACCCTGA GATCTCCGATGCAGCTGTTGTTGGGATAAAAGATGAACTGGCCGGGGAGATTCCAGTAGCATTCGTGGTGAAATCGGCGAATTCTGAGCTTACAGAGGAC CTAATCAAGCAGTACATCTCTAGACAGGTGGTGTTCTACAAGAGAATAAGTCGGGTGTTCTTCAGGGAGACCATTCCAAAGGCACCCTCTGGGAAAATTT TGAGGAAGAACTTGAGAGCTGAACTGGCAAATGGTCTCCAGAACTGA
AA sequence Show only first row Show all	>Lus10026143 pacid=23173216 polypeptide=Lus10026143 locus=Lus10026143.g ID=Lus10026143.BGIv1.0 annot-version=v1.0 MESNQQQTPATSAGEEFIFRSKLPDIDIPNHLPLHSYIFQNISNHATRPCLINSVTGEVYTYADVHLTARRVAYGLDKLGIRQGDVIMLLLPNCPQFVLA FLGASFRGAIATAANPFFTPAEVAKQAKASGAKLVITQAAFADKLKDLAADDAIKVMCVDSPPDWCLHFSQLSESDDSAVEVEISSDDVVALPYSSGTTG LPKGVMLTHKGLVTSVAQQVDGENPNLYFNSEDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEIGPLLELIQRYRVTIAPMVPPVVLAIAKSPDT EKYDLSSIRMLKSGAAPLGKELEDAVGNKFPNARLGQGYGMTEAGPVLSMCLAFAKEPFEIKAGSCGTVVRNAEMKIVDPDTGSSLPRNQRGEICIRGHQ IMKGYLNDPESTSRTIDQQGWLHTGDIGYIDGDDELFIVDRLKEIIKYKGFQVAPAEFEALLIAHPEISDAAVVGIKDELAGEIPVAFVVKSANSELTED LIKQYISRQVVFYKRISRVFFRETIPKAPSGKILRKNLRAELANGLQN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	0	1
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	2.2	0.9638
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	7.2	0.9243
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	7.7	0.9452
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	7.7	0.9405
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	9.1	0.8876
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	10.2	0.9147
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	11.3	0.9273
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	11.8	0.9360
AT1G21550			Calcium-binding EF-hand family...		Lus10028657 [exp]	12.3	0.8665
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	13.6	0.9314

Compare expression of checked genes

Lus10026143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.