Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06530 164 / 1e-47 ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039121 [exp] 227 / 2e-69 AT3G06530 1694 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10008676 [exp] 225 / 9e-69 AT3G06530 1137 / 0.0 ARM repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151500 [exp] 158 / 2e-45 AT3G06530 1242 / 0.0 ARM repeat superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026144 pacid=23173270 polypeptide=Lus10026144 locus=Lus10026144.g ID=Lus10026144.BGIv1.0 annot-version=v1.0 ATGACGGCTCTTAAGGGAGATGTTCCTCCGATTTGGCAGAACCCCCGCTGCCAACATAGACGAAGCATTGTGTATGGCATGCATCCGCCAGCTTCACTTC ACAAGCATCCGAGCGTGCCATCGGTTGGCGAAGTTGATGACCTATTGGTGGGCTGCGTAGGCCAAATGGCTGTGACTTCAGGATCTGATCTTCTATGGAA GCCACTGAACCACGAGGTACTGATGCAGACTCAAAGCAGTAAGGAAAGGCCGAAGCGTCTAGGACTAAGGACAGTGAAGTACCTGGTTGATAATCTGAAG GAAGAATACATGGTATTGCTGCCAGAGACTGTGCCGTTCCTCGCTCATTTGCTGGAGGACAGCGGCGTAAGAAGCCCTGCACAGGAAGTTGCCGAGGAGA TGGAGACAGTGAGTGGCGAAAGCCTGCAGGAATGCCTTTCTTGA
AA sequence Show only first row Show all	>Lus10026144 pacid=23173270 polypeptide=Lus10026144 locus=Lus10026144.g ID=Lus10026144.BGIv1.0 annot-version=v1.0 MTALKGDVPPIWQNPRCQHRRSIVYGMHPPASLHKHPSVPSVGEVDDLLVGCVGQMAVTSGSDLLWKPLNHEVLMQTQSSKERPKRLGLRTVKYLVDNLK EEYMVLLPETVPFLAHLLEDSGVRSPAQEVAEEMETVSGESLQECLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	0	1
					Lus10002291 [exp]	1.7	0.9749
					Lus10008409 [exp]	2.0	0.9748
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	2.4	0.9734
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	4.5	0.9511
					Lus10042024 [exp]	5.5	0.9488
					Lus10022993 [exp]	5.7	0.9515
					Lus10032696 [exp]	7.5	0.9444
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10018527 [exp]	7.7	0.8747
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	8.5	0.9389
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	9.2	0.9303

Compare expression of checked genes

Lus10026144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.