Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74320 493 / 3e-173 Protein kinase superfamily protein (.1) AT4G09760 448 / 1e-155 Protein kinase superfamily protein (.1.2.3) AT1G71697 442 / 2e-153 ATCK1 choline kinase 1 (.1) AT2G26830 183 / 1e-52 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024127 [exp] 568 / 0 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10005386 [exp] 500 / 7e-175 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10028728 [exp] 446 / 1e-154 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10028696 [exp] 440 / 3e-152 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10019424 [exp] 169 / 4e-45 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10008675 [exp] 0 / 1 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032000 [exp] 541 / 0 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.003G193000 [exp] 530 / 0 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.005G197500 [exp] 456 / 5e-158 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.002G063700 [exp] 451 / 2e-156 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3) Potri.006G120700 [exp] 173 / 7e-49 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase CL0016 [flax] [poplar] PF04428 [flax] [poplar] Choline_kin_N Choline kinase N terminus
Representative CDS sequence Show only first row Show all	>Lus10026145 pacid=23173182 polypeptide=Lus10026145 locus=Lus10026145.g ID=Lus10026145.BGIv1.0 annot-version=v1.0 ATGGGGGTGAACAACAAAGATGGGAGGAAACCAACAGAAGAGCGTATACCGGGGGAGGCAAAGGAGATGCTGAAATCGTTGGCATCCAAGTGGGAAGATG TCATTGATGCAAATGCATTAAAGGTGATCCCTCTCAAAGGTGCAATGACCAATGAGGTCTTCCAGATTAAATGGCCTACAAAGACGACTAGCGAACTCTC GCGGAAGGTTGTGGTCCGGATTTATGGTGCAGGTGTCGAGGTGTTCTTCGACAGGGACGATGAGATCCGGACATTTGAGTTCATGTCCAAACAAGGCCAG GGACCTCGACTGCTTGGCCGGTTTCCAAATGGACGAATCGAGGAATTCATCCGTGCACGGACACTATCAGCTCCCGATCTGCATGATCCAGAGATTTCGG TGCTTATAGCAGCAAAAATGAGGGAGTTCCATTGTCTTGACATATCTGGTCAGAAGGTTACCTATCTCTGGGATAAACTGAGAAATTGGCTCAAGGTGGC AAAGGATATGTGCTCTCCTGACGAAGCTAAGGCATTTCGCTTGAATGAACTTGATGAGGAAATCACGTTACTCCAAAATAAACTCTCCGTTGATCAACGC ATTGGGTTCTGCCATAATGATCTACAGTATGGTAACATAATGATTGATGAAGAAACCAGAGCAATAACCATTATCGACTACGAATATTCAAGCTACAACC CTGTTGCCTTTGATATAGCAAATCATTTCTGTGAGATGACTGCTGACTACCACACAGATACACCTCATGTCGTGGACTACAGTAAATACCCTGGTCCGGC GATGCGCAAGCAATTTGTGGTTGCTTATCTGAGTTCTTCAGTGGAACGCCCTAGTGACAAAGAAGTGGAGCAACTGCTTGAAGATGTTGAGAATTACACA CTTGGAAGCCATCTGTTTTGGGGCCTGTGGGGCATAATTTCGGAACATGTTAACAAAATAGATTTCGACTACTTGGAGTACTCAAGGCAGCGATTCGAAC AGTACTGGCTAAAAAGATCTATACTTTTTACTTCGACAGAAGCAGTCACTCCTGCCACTGCCATTGCCATGGCCACAACGACCATTGCCACTGCCACTCC CACAACCACTCTCCCTGCAGTTGCTGCTGCTGTGACCACTCCCACGGAAACTGCTGCTCTGACCACTCCCACAACCACTCTCCCTGCAGTTGCTGCTGCT GTGACCACTCCCACGGAAACTGCTGCTCTGACCACTCCCACAACCACTCTCCCTGCAGTTGCTGCTGCTGCGACCGCTCCCACGGAAGCTGCCAATACCA ACATGACGAAGACTACCACCACTGCAAAAGCTGAAGAGCTACAAGGCAAGGAGTCGGGAAGCGAAGACAAACGAAAAGAAGTAGCGGCAGGTGGGGAATC CAGCATGGGAATGGAACCAACGCCCGGTAAGGAAGCTGGAAAGGGCGCTTCTTCAGAACAAACATCGCGATCAAAGCATGGGCAGGCTGGGGTGTTCAGG AAGTTTAAGCGGTATTTGGGGTTCAGCAATGTGTTTAAGAAGAACAGCCACTCCCACCCTAAATCAGCTGACCTCCATCCTAAGGACGATGCTGCTGCTA AAACTCCTCGAGATTAA
AA sequence Show only first row Show all	>Lus10026145 pacid=23173182 polypeptide=Lus10026145 locus=Lus10026145.g ID=Lus10026145.BGIv1.0 annot-version=v1.0 MGVNNKDGRKPTEERIPGEAKEMLKSLASKWEDVIDANALKVIPLKGAMTNEVFQIKWPTKTTSELSRKVVVRIYGAGVEVFFDRDDEIRTFEFMSKQGQ GPRLLGRFPNGRIEEFIRARTLSAPDLHDPEISVLIAAKMREFHCLDISGQKVTYLWDKLRNWLKVAKDMCSPDEAKAFRLNELDEEITLLQNKLSVDQR IGFCHNDLQYGNIMIDEETRAITIIDYEYSSYNPVAFDIANHFCEMTADYHTDTPHVVDYSKYPGPAMRKQFVVAYLSSSVERPSDKEVEQLLEDVENYT LGSHLFWGLWGIISEHVNKIDFDYLEYSRQRFEQYWLKRSILFTSTEAVTPATAIAMATTTIATATPTTTLPAVAAAVTTPTETAALTTPTTTLPAVAAA VTTPTETAALTTPTTTLPAVAAAATAPTEAANTNMTKTTTTAKAEELQGKESGSEDKRKEVAAGGESSMGMEPTPGKEAGKGASSEQTSRSKHGQAGVFR KFKRYLGFSNVFKKNSHSHPKSADLHPKDDAAAKTPRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	0	1
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	2.4	0.9527
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	2.8	0.9559
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	3.7	0.9529
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	3.9	0.9463
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	4.2	0.9379
AT5G08060			unknown protein		Lus10021149 [exp]	4.9	0.9358
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	5.3	0.9364
AT1G44414			unknown protein		Lus10025672 [exp]	6.2	0.9207
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	6.6	0.9506
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	7.3	0.9353

Compare expression of checked genes

Lus10026145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.