Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008674 [exp] 403 / 1e-133 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193100 [exp] 363 / 4e-109 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10026146 pacid=23173279 polypeptide=Lus10026146 locus=Lus10026146.g ID=Lus10026146.BGIv1.0 annot-version=v1.0 ATGTCGAGCTTCGGCTTCCGTCAACCCCAATTCTCCGAGGAATTGGCGTACCTACCCATATGGCTTCAAAATCCCCAACTGGAAACAACGCCATCGGACT CTGGAAGAGACGCTCAAACCGCCTCTTCTTCTGGCCGAGAACTTAAAAGTTTGTCGATCATGAGAGACAGCATTGGCTGTGAAGAAGGGAGATATAAGGA TTGCTATTTGTTCCTTTCTGGTGATGGTAGTAATTCAGAAAGCGGTGTGGCTCCATCCCCTGGAAATCTGCTTCATCTTAGTTTACATATATCTTTGGAT GCGGATTCCACAAGTACCTCGAGCCAGCTTTTATATTCATCGGACCCTGGTAGATCCAGTAAGCTTCCCTCTCAGCATCAAGTTGAAAATCTGTCTAGAT GGGATAAGAAGGCTTCTCAACTCGAAATAGACAAGAATGGTGTTAGGGAAACTTTCCCATCTCTTGCTTCCACCCCAGAAGTTGCGAACTGCGAAAGTAT ACAGTTACTGAGCAATAAGCAGAATAGAGGGATCCAAAGCGAAGCAAATTCGAACGTTCCCCCAGCGATTATGGAAACTGTCAGTCCAACGTTGTCTAAG AGTGGTACTCATGGCAAAGGAAAGTTTCCTGGAAACCAGAGTGAAGATGCTGACGTAGATGGTGCTGTGGAGCTCTCTATAGCAGCATCTGAAGCACTGG TTATACACGAGTTGATGAAGGAGGTTGAGTCAAATTCCGAAGGCTTGGAAATGGGGTGTATTCTTGAAGCTGCACTCAGAGTCAAGCAAGCACGGTTGGA GGACTTGGAAGATGGCTGCTACCGATATCATGATGATGTTGATGAGCTTGACTTTCTCTCAGACCTTGATGATTCGGTTATTGGGGATACCTTTTCGGAC GTGGGATTATCAGTGAGCGGCTCCCACGTTTCTGGTTCAGATGTATCTCATGTCAAAGGTACTCCTACTGTGGGAGAAAATGATGATGACCATATCAGCG GAAGTATTCATAGATTAGATCAGCAAGAGGATATTTCACTAAAAGAGACACAGGAAGTAGATTGTAATGGTGGCCAAAAATGGCTGACAAGGAAAAGCAT TGCTAAGTATTATATTGACGAGACAAGCTTCATCTCGGAATCTGCTGACATTGCTGTGAATCAAGTTTCTTGTATGCATAGAAAACCAAATCTCACCACT ATACCATCACAGTCCAGCGTAAACTTCAATGGTTTGATAGATAAGGCTCACGAAGGCTTAGATGTTTTTCCTTCCCAGGAGGTTAAATGTTCTTACCCAT CGGCTTCAGATCCTCTCTGTTCTGTTATTCCTTGCAGTATTCCCCTGGAAGATGTTTCCCCTGCAAATCAAAACCAAGATAATGCAGAAGTTAAAGCTCA GAACTGCTTCAGCCAGAAATCTATAGTTGGGATGCATGGCTCTGATGATCAAGCTGTATTCACAACTGGAAATGAACACTGTGTTCCCCTAGTTCGGCGA CAGTTAACTACCCTTAAAAATGACAGCAAAATATGTATTGACACTGATCCCATCTTGGAGGGAGAAAGAGCTCTCTGTAATGCAGACGTTCCATCAAAGA TGTGCCATCAAGTTGTTGGCTCTTCTGGTAAGGAACATGAAGGTTTGAGCTCAGACAAGGATGAGGAACAAGTTCAAGATTCACCCCTGAATAGGAATGT CGTTGATGATGTGGAAAATTGTAAAAAGAGCCTTTGTGAACCTGGGAAAGATGAAGCTTTCCTGTCTCTTCATTCTTCTATCGTTCTAAATCGGACACGA CAACGACTGCAGGGCTGTGATTTGAATGATAATAATGTATCTGCAGCGAGATGTGTAGAGCAGGATCTTCCAGAAAACAGAAAGTTTAATCAGGGTGAAA TTCCTCAAAACATGCAATCTGAAGATGGTCCTTCTTGTACTAGAAATCTAGTTCGAAAGCGAGTTCGCTTCTCAGTTGAAACCCAGCATGACCAAAGCAA GGGCCTCTTGCTGAAGTCAAAAGCATCATCTGGAGGAGATCCGACTGTAAGAGACCACAAAAAATCAAAACTTTCCAAACCAAGATCAAGGTCTCCTGGT TCTAACATTAGGAACAGATGTCTTCTTGGCCATAAAATAGACTTCAAGAATTTGATATTCCACAGGCTGGAATTCTTGATCACCGGATTCTCTTGTGCGA AGGAGAGAGAGCTTGGGGAAATACTACAGAAATTTGGAGGCATTGTCCTTTCTGATATCCCTTCATATCGAAGTTCAAGCTGCAAGGGGGTTATAAGATC TGTTACCCAGCAGCTTCCTGTTATTATCTGCTCAAGAAAGCTGCAAACTTCCAAGTTCCTGTACGGTTGTGCAGTGAATGCTTCCATTTTGAAAGCCAAG TGGGTTACTGATTCAATTGCAGGTGGTACCATTGCATCAACAGAGAGGTATCTTGTCCTTCCAAATCAAGCAGACACAAGGCTCACAAGAATGGTGTCAA TGAATCAAAAAAATCGTATATTTGACAGAGTGGGGATCATGCTTCATGGAAAGCCCAGCTTTTGCAGGAAATTATCGTTGATAATCAAGCACGGAGGTGG AGAGGTATTCAAAACGCTTCAGAGTTTACTGTGGGGCCTTGATAGAGGAAAGCTAAAGCGTGGAGTAATAGTGGCTGAAGATCAGAGCAGGGCGTTGCGA CACTTGCAGCATTGTGCCGAGGAGCAGAAAATAGCCTTGATGTCGGCTAACTGGATTGTGAAAAGCTTGCATTTGGGGAAGCTTTTCCCTCTTCTACAGA AAGAAGACTCTCCTGAGGAAATTGAAGCTTCGTCAAATTCCATGGATTGGAGTCAAGAGATCTGA
AA sequence Show only first row Show all	>Lus10026146 pacid=23173279 polypeptide=Lus10026146 locus=Lus10026146.g ID=Lus10026146.BGIv1.0 annot-version=v1.0 MSSFGFRQPQFSEELAYLPIWLQNPQLETTPSDSGRDAQTASSSGRELKSLSIMRDSIGCEEGRYKDCYLFLSGDGSNSESGVAPSPGNLLHLSLHISLD ADSTSTSSQLLYSSDPGRSSKLPSQHQVENLSRWDKKASQLEIDKNGVRETFPSLASTPEVANCESIQLLSNKQNRGIQSEANSNVPPAIMETVSPTLSK SGTHGKGKFPGNQSEDADVDGAVELSIAASEALVIHELMKEVESNSEGLEMGCILEAALRVKQARLEDLEDGCYRYHDDVDELDFLSDLDDSVIGDTFSD VGLSVSGSHVSGSDVSHVKGTPTVGENDDDHISGSIHRLDQQEDISLKETQEVDCNGGQKWLTRKSIAKYYIDETSFISESADIAVNQVSCMHRKPNLTT IPSQSSVNFNGLIDKAHEGLDVFPSQEVKCSYPSASDPLCSVIPCSIPLEDVSPANQNQDNAEVKAQNCFSQKSIVGMHGSDDQAVFTTGNEHCVPLVRR QLTTLKNDSKICIDTDPILEGERALCNADVPSKMCHQVVGSSGKEHEGLSSDKDEEQVQDSPLNRNVVDDVENCKKSLCEPGKDEAFLSLHSSIVLNRTR QRLQGCDLNDNNVSAARCVEQDLPENRKFNQGEIPQNMQSEDGPSCTRNLVRKRVRFSVETQHDQSKGLLLKSKASSGGDPTVRDHKKSKLSKPRSRSPG SNIRNRCLLGHKIDFKNLIFHRLEFLITGFSCAKERELGEILQKFGGIVLSDIPSYRSSSCKGVIRSVTQQLPVIICSRKLQTSKFLYGCAVNASILKAK WVTDSIAGGTIASTERYLVLPNQADTRLTRMVSMNQKNRIFDRVGIMLHGKPSFCRKLSLIIKHGGGEVFKTLQSLLWGLDRGKLKRGVIVAEDQSRALR HLQHCAEEQKIALMSANWIVKSLHLGKLFPLLQKEDSPEEIEASSNSMDWSQEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026146 [exp]	0	1
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	4.1	0.9516
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	6.0	0.9496
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	7.5	0.9304
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	7.5	0.9473
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	9.4	0.9470
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	9.4	0.9430
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	12.4	0.9454
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	13.0	0.9375
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	13.4	0.9407
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	14.5	0.9441

Compare expression of checked genes

Lus10026146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.