Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07010 417 / 2e-146 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G07000 389 / 1e-135 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT3G45070 300 / 1e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 289 / 3e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 286 / 2e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 285 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 284 / 2e-94 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT2G03750 282 / 2e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 281 / 2e-93 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT1G28170 271 / 2e-89 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 650 / 0 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 249 / 1e-80 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10003070 [exp] 231 / 2e-73 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034079 [exp] 224 / 2e-71 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041611 [exp] 226 / 3e-71 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 219 / 8e-69 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033720 [exp] 218 / 2e-68 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 212 / 3e-66 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 211 / 1e-65 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193500 [exp] 467 / 3e-166 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 381 / 1e-132 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 381 / 2e-132 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 380 / 2e-132 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 379 / 1e-131 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138450 [exp] 327 / 3e-111 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138501 [exp] 325 / 2e-110 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138400 [exp] 318 / 1e-107 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G189066 [exp] 316 / 3e-107 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 301 / 3e-101 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10026147 pacid=23173240 polypeptide=Lus10026147 locus=Lus10026147.g ID=Lus10026147.BGIv1.0 annot-version=v1.0 ATGCCAACATCATCATCCACCCATTTCTTGGCACCACAAGAAGAAGATGTTAGCCTAGAATGCCAAAAGTTGCTTCTTTCTCTCCCAAGGGAGAAAGGGT GGAGGACTCCTTTCCTCTACAAGTTCCAAGGCTTTTGGTGCCAACCAAAGGAAATCCAAACAATCCTAGCCTTCCAAGCCCACTTCCAAGTCAAGGACAC TGATGTCCTCGTGGCTTCCATCCCCAAGTCGGGCACCACTTGGCTCAAGGCCTTGGTTTTCTCCATCTCGAATCGGACCCGGTTCCCTATTCTGATCCCT ACCGACCGAAAACAACAACCCTTACACCCATTGCTCGTCTCGAACCCTCACGACCTGGTGCCTTTCTTCGAGTACAAGCTTTTCACATCGAGTAGTACTG CTTCCCCTGCCGGCCTGTCAGAGCTGCCTGATCCAAGACTGTTCGCGACACACATACCGTTCGGGGCGCTACAGGAACCGATCAGGGAATCGGGGTGCAA GATTGTGTACGTATGTAGGAACCCATTTGACACATTCATCTCCTCATGGCAATACTCCAACAAGATCAAGGGAGGGAGTGCTCCACTCTTGCCCTTGGAG GAGGCATTTGAGATGTATTGCAAAGGGGTTGTTGGGTTTGGTCCATTTTGGGATCACATGTTGGGGTATTGGAAGGAGAGCCAAGAGAGGCCAGAAAAAG TGTTGTTCTTGAAGTATGAAGAGATGAAAGAGGATGCTGGGTTGCACTTGAGGAAGCTGGCTGAGTTTCTTGGGTGCCCATTTTCAATGGAGGAAGAGGA AGAAGGGTTGGTGGAAGGGATTGCAAAGCTTTGTAGCTTTGAGAAGCTTAAGGAGTTGGAGGTGAACAAGAGTGGGAAGGCTATAATGAACTTTGAGAAC AAGCATTTGTTCAGGAAAGGGGAGGTTGGGGATTGGGTGAATTACTTTTCCCCTGAAATGGTTGAGAAGTTGGCTCATGTCATGGAGGAGAAATTGGGTG GCTCTGGCCTCAAGTTCAAGGTCTTCAATTCATAA
AA sequence Show only first row Show all	>Lus10026147 pacid=23173240 polypeptide=Lus10026147 locus=Lus10026147.g ID=Lus10026147.BGIv1.0 annot-version=v1.0 MPTSSSTHFLAPQEEDVSLECQKLLLSLPREKGWRTPFLYKFQGFWCQPKEIQTILAFQAHFQVKDTDVLVASIPKSGTTWLKALVFSISNRTRFPILIP TDRKQQPLHPLLVSNPHDLVPFFEYKLFTSSSTASPAGLSELPDPRLFATHIPFGALQEPIRESGCKIVYVCRNPFDTFISSWQYSNKIKGGSAPLLPLE EAFEMYCKGVVGFGPFWDHMLGYWKESQERPEKVLFLKYEEMKEDAGLHLRKLAEFLGCPFSMEEEEEGLVEGIAKLCSFEKLKELEVNKSGKAIMNFEN KHLFRKGEVGDWVNYFSPEMVEKLAHVMEEKLGGSGLKFKVFNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10026147 [exp]	0	1
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	16.6	0.8664
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007560 [exp]	24.1	0.8598
AT2G16750			Protein kinase protein with ad...		Lus10025103 [exp]	34.2	0.8030
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	86.2	0.7755
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10000893 [exp]	109.4	0.7696
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	147.5	0.7535
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	158.6	0.7593
AT3G19950			RING/U-box superfamily protein...		Lus10017722 [exp]	168.8	0.8266
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	188.7	0.8265
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	188.9	0.7759

Compare expression of checked genes

Lus10026147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.