Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011580 [exp] 104 / 4e-26 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1) Lus10000744 [exp] 94 / 1e-23 AT1G69550 60 / 4e-10 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10019654 [exp] 97 / 3e-23 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015649 [exp] 50 / 9e-08 AT1G69550 75 / 1e-15 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10018021 [exp] 49 / 7e-07 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042778 [exp] 49 / 8e-07 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 48 / 2e-06 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001537 [exp] 47 / 4e-06 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10001281 [exp] 44 / 4e-05 AT1G69550 67 / 2e-12 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10026149 pacid=23173168 polypeptide=Lus10026149 locus=Lus10026149.g ID=Lus10026149.BGIv1.0 annot-version=v1.0 ATGTTGGATTTGAGTGGCTGTATCAAGATTCAGTCTTTGCCTCAACTTCTTCCACTAGAGCTTAAGTATTTATATTTAGGTGGGTGCAAGCCATTACAAG CTCTACCAAGCAACACGGGGAAGCTGAACTTCTGGGTCCTGCACTTCGAAAATTGCCCACAATTGGAATATAAGCTGGCGGATCAGGTCGCTGCAGATTT CTTCAGCCGCGTAATGATGTGTCCGACAGTTCGGGCAACAGTGAATAGGCTGAAGGGATTGCATTCGGCGTATCGTGTTTCTTCGGATGCTACAGTAGTT CGGCTGAGGATGAAATGCGATGTCGCGATTGAGCACGCCACTGTCGCTACTTTCTCGAGCTCTGCCATTTGGATTTGTGGTGGAAGTGGCGCCCTCTTGG ATTATGTGTATCTATGGTTTGACAAGAACTTGAAAGAGAAGAAGAGGCATATAAAGCAGCATCAATTGAAGAACCGTGGTATGTGGAATATGCTCGGTCC ATTATATCGTTTCGAGTTTACGCTGTGCCAGGAAGAGGAGAAGATATCGAGGGAGTGA
AA sequence Show only first row Show all	>Lus10026149 pacid=23173168 polypeptide=Lus10026149 locus=Lus10026149.g ID=Lus10026149.BGIv1.0 annot-version=v1.0 MLDLSGCIKIQSLPQLLPLELKYLYLGGCKPLQALPSNTGKLNFWVLHFENCPQLEYKLADQVAADFFSRVMMCPTVRATVNRLKGLHSAYRVSSDATVV RLRMKCDVAIEHATVATFSSSAIWICGGSGALLDYVYLWFDKNLKEKKRHIKQHQLKNRGMWNMLGPLYRFEFTLCQEEEKISRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026149 [exp]	0	1
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	1.0	0.9999
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	1.4	0.9999
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	15.7	0.9886
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	16.0	0.9871
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	17.2	0.9978
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	17.5	0.9723
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10007220 [exp]	22.1	0.9950
					Lus10014857 [exp]	24.9	0.9939
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	26.8	0.9543
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	27.1	0.9499

Compare expression of checked genes

Lus10026149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.