Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06980 66 / 4e-12 unknown protein AT3G12320 62 / 7e-11 unknown protein AT5G64170 52 / 3e-07 dentin sialophosphoprotein-related (.1.2) AT3G54500 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008671 [exp] 651 / 0 AT3G12320 65 / 1e-11 unknown protein Lus10005384 [exp] 337 / 5e-114 AT3G12320 79 / 1e-16 unknown protein Lus10024129 [exp] 334 / 5e-113 AT3G12320 80 / 8e-17 unknown protein Lus10015846 [exp] 50 / 2e-06 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10009319 [exp] 50 / 3e-06 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10024170 [exp] 47 / 1e-05 AT3G54500 305 / 5e-94 unknown protein Lus10039553 [exp] 44 / 0.0002 AT3G54500 316 / 3e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031800 [exp] 164 / 7e-47 AT5G06980 75 / 7e-15 unknown protein Potri.003G193800 [exp] 135 / 3e-36 AT3G12320 66 / 5e-12 unknown protein Potri.T126406 [exp] 54 / 8e-08 AT3G54500 191 / 6e-55 unknown protein Potri.T126606 [exp] 52 / 2e-07 AT3G54500 191 / 2e-56 unknown protein Potri.003G200600 [exp] 53 / 3e-07 AT3G54500 298 / 3e-93 unknown protein Potri.T127206 [exp] 53 / 3e-07 AT3G54500 355 / 2e-113 unknown protein Potri.001G025100 [exp] 50 / 3e-06 AT3G54500 325 / 4e-102 unknown protein Potri.001G205800 [exp] 48 / 9e-06 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2) Potri.T126906 [exp] 44 / 0.0001 AT3G54500 156 / 4e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026150 pacid=23173082 polypeptide=Lus10026150 locus=Lus10026150.g ID=Lus10026150.BGIv1.0 annot-version=v1.0 ATGGATCAGTGTTTTGGATATGATGATCTTGTTGTTCCTAAAGACCAGTCAATTTCTGATGGATACCAATCACATGGCAGCTTCTGGTCCAATTGGGAAC TAGATTCTCATAACAGCTTCCAATTCCCTCAGAAATACTTCATCTCCAATGCAAATCGGACTTCGGAGCAACTCAGATCCGGTAGCCAAACTTCTGGCAA TCAACTGGACAAAGATCTATCTAGTTGTTCGAGTTTTGGTGGAAGGCAAGGATCTGACAACTCCTCCTTTCAGTATACTTCTGCTACTCGTCAGGAGCAG GATTACCAACTCAATGGCATTGCAAAGATCGAGCACATGGACGATCATTTCTTGAGTTCTTTGATCGATGATCTACAAGAGATGGACGATAATCAAAATT CTCCATGCTTTTCTTCCGAGTCTCAAGATTGCATGAATCCCGCCGATGAGCTCTGGACTGAAGCTGCAGTAGATTCAGGATCGGTTTCGAGCTATGGTTT CACCACAGGAAGCTCTTGTACCCGCTCGAATTTTCAGTCCATGAAGCATGGGACAACGAAAACCGGTCTTCAACAACAAAAGTCCATTTTCAAGGTACCC GCTTTTGTATCGGTACCATCTGAGGAGGATGATTGTACGAATCTGCAAGGCCAAGACGAACCATCGTGCGAAGAGGCTGCACTCTATGAGCTGGACTTGG TGATGACACAGATGACCACAAAGACTCGGATATGTTTCCGCGATGCTCTATACCGTTTGGCGAAAAACTCGAGACCACTTGGAGTCGTATATGAAGAGGT TGACACCGACTTCCCTTCTTGGTTGGAAGGAAGTGGAATGGAACAACAAACAAACCAGATCGACCGAGCCATTGCGAACATGATGTTCAACAAGATGGAA CTAGATGTGATGGACTACCACATGTCGACACCAGATCGCTCCGACCAAGATTTCGTGCCAAGCCATCCGCAATGCTACTACACCAATGTCTCAGACGAGT CGATTTCCCCTGATGATGCTGAGGTTCCAGTTTCTGGTCACAGAGGCTGCATCGGAGGATCAGCATCCGAAGATTCAGGCAGGGATGTATAG
AA sequence Show only first row Show all	>Lus10026150 pacid=23173082 polypeptide=Lus10026150 locus=Lus10026150.g ID=Lus10026150.BGIv1.0 annot-version=v1.0 MDQCFGYDDLVVPKDQSISDGYQSHGSFWSNWELDSHNSFQFPQKYFISNANRTSEQLRSGSQTSGNQLDKDLSSCSSFGGRQGSDNSSFQYTSATRQEQ DYQLNGIAKIEHMDDHFLSSLIDDLQEMDDNQNSPCFSSESQDCMNPADELWTEAAVDSGSVSSYGFTTGSSCTRSNFQSMKHGTTKTGLQQQKSIFKVP AFVSVPSEEDDCTNLQGQDEPSCEEAALYELDLVMTQMTTKTRICFRDALYRLAKNSRPLGVVYEEVDTDFPSWLEGSGMEQQTNQIDRAIANMMFNKME LDVMDYHMSTPDRSDQDFVPSHPQCYYTNVSDESISPDDAEVPVSGHRGCIGGSASEDSGRDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06980			unknown protein		Lus10026150 [exp]	0	1
AT3G12320			unknown protein		Lus10008671 [exp]	1.0	0.9307
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	2.0	0.8745
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	3.0	0.8631
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	5.5	0.8449
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	5.7	0.8520
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	5.7	0.8296
AT3G55580			Regulator of chromosome conden...		Lus10040266 [exp]	6.3	0.8210
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	6.5	0.8407
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	8.1	0.8098
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10006046 [exp]	8.2	0.6726

Compare expression of checked genes

Lus10026150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.