Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18190 740 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 202 / 2e-60 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 187 / 3e-54 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 171 / 7e-48 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 161 / 3e-44 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 155 / 4e-42 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 145 / 1e-38 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 109 / 6e-26 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 106 / 8e-25 TCP-1/cpn60 chaperonin family protein (.1) AT3G14270 52 / 6e-07 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008670 [exp] 790 / 0 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006240 [exp] 199 / 2e-59 AT1G24510 816 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 195 / 2e-57 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 195 / 3e-57 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10036947 [exp] 195 / 6e-57 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 193 / 4e-56 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 192 / 7e-56 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032176 [exp] 192 / 8e-56 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 186 / 9e-54 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042600 [exp] 755 / 0 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 745 / 0 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 204 / 1e-60 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 200 / 3e-59 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.008G182300 [exp] 200 / 6e-59 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 199 / 8e-59 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 180 / 2e-51 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 173 / 1e-48 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 169 / 4e-47 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 162 / 8e-45 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10026151 pacid=23173231 polypeptide=Lus10026151 locus=Lus10026151.g ID=Lus10026151.BGIv1.0 annot-version=v1.0 ATGGCTGTACCTGTTGAGTTGTCCGATCGTGATTCGCTTGTTAAATCTGCTAGTACTTCGTTGAACAGTAAAGTGGTGAGTCAGTATTCTACTCTGCTTG CTCCTCTAGCTGTGGATGCGGTTTTGACAGTAGTTGATCCGGAGAAGCCTAGTATGGTGGATCTTAAGGACATTAAGATTGTGAAGAAGCTAGGTGGGAC TGTGGATGACACTGAGATGGTTAAAGGTTTAGTGTTTGATAAGAAAGTTAGCCATGCTTCGGGTGGGCTGACACGTGTGGAGAATGCGAAAATCGCTGTG ATTCAGTTCCAGATATCACCACCGAAGACTGATATTGAGCAGAGCATTGTGGTGTCTGACTACACCCAGATGGATAGGATTCTGAAGGAAGAGAGGAATT ACATCTTGGGAATGATCAAGAAGATTAAGGCAACTGGTTGCAATGTGTTGTTGATTCAGAAGAGTATTCTTAGGGATGCAGTCACAGAGTTGTCATTGCA TTATCTGGCTAAGGCCAAGATCTTGGTCGTTAAGGATGTCGAAAGAGACGATATTGAATTCATCACCAAGACTTTGAACTGCTTGCCAATTGCTAATATT GAGCATTTCAAAGAAGAGAAGTTAGGGCACGCTGATCTTGTTGAGGAGGTTTCCCTTGGGGAAGGCAAGATTGTGAAGATTACCGGGATCAAAGACATGG GAAGGACTGCTACTGTTCTTGTACGAGGATCAAACCTATTGGTTCTCGATGAAGCTGAGCGGAGTTTGCACGATGCGCTGTGCGTCATTAGATGCTTGGT CAACAAGCAATTCTTGATTGCAGGTGGTGGAGCTCCCGAAATTGAGCTGTCGAGGCAGCTCGGTGCATGGGCAAAGGTCCTCCATGGAATGGAAGGCTAT TGCGTGAGGTCATTTGCTGAGGCGCTCGAGGTTATTCCTTATACTTTGGCAGAGAATGCAGGGCTGAACCCGATAACGATTGTGACCGAGCTGAGGAATA GGCACGCTCAAGGCGAGATCAATGCTGGCATCAACGTGAGGAAGGGACAAATCACAAACATTTTGGAGGAGAACGTTGTGCAGCCTTTGCTGGTAAGCAC CAGTGCCATAACCCTTGCCACAGAGTGCGTCCGAATGATTTTGAAGATTGATGACATTGTAACCGTCAGGTAA
AA sequence Show only first row Show all	>Lus10026151 pacid=23173231 polypeptide=Lus10026151 locus=Lus10026151.g ID=Lus10026151.BGIv1.0 annot-version=v1.0 MAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLTVVDPEKPSMVDLKDIKIVKKLGGTVDDTEMVKGLVFDKKVSHASGGLTRVENAKIAV IQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTELSLHYLAKAKILVVKDVERDDIEFITKTLNCLPIANI EHFKEEKLGHADLVEEVSLGEGKIVKITGIKDMGRTATVLVRGSNLLVLDEAERSLHDALCVIRCLVNKQFLIAGGGAPEIELSRQLGAWAKVLHGMEGY CVRSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	0	1
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	5.5	0.9420
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	5.9	0.9298
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	6.6	0.9453
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	11.2	0.9260
AT3G25545			unknown protein		Lus10013064 [exp]	12.2	0.9112
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	13.3	0.9365
					Lus10030881 [exp]	13.9	0.8557
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	15.1	0.9223
AT5G43960			Nuclear transport factor 2 (NT...		Lus10024953 [exp]	16.4	0.9241
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	17.5	0.9185

Compare expression of checked genes

Lus10026151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.