Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 291 / 8e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 274 / 1e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 269 / 4e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09510 266 / 6e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 264 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 261 / 3e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 248 / 2e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 216 / 2e-69 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 184 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 181 / 9e-56 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008668 [exp] 358 / 3e-125 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 290 / 2e-98 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 298 / 3e-95 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10002300 [exp] 281 / 5e-95 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 280 / 3e-94 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 279 / 6e-94 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 278 / 9e-94 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 278 / 2e-90 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 268 / 7e-90 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 288 / 2e-97 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 287 / 3e-97 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 279 / 5e-94 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 275 / 2e-92 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 269 / 3e-90 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 218 / 2e-70 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 203 / 2e-64 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G125400 [exp] 199 / 1e-62 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G229500 [exp] 186 / 5e-57 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G033600 [exp] 182 / 4e-56 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10026152 pacid=23173200 polypeptide=Lus10026152 locus=Lus10026152.g ID=Lus10026152.BGIv1.0 annot-version=v1.0 ATGAGCGGTAGTAGTGGAGAAGGGAAAGTGGTGTGTGTAACAGGCGCTTCAGGATTCATAGCATCATGGTTGGTGAAGCTTTTGCTTCACCATGGATACA CCGTCAATGCTACTGTTCGTGACCCATGTGACTCGAAGAAGACAGAGCATCTAGTTGAGCTTGATGGAGCCAAGGAAAGACTGCATATGTTCAAAGCAGA GTTGCTGGAAGAAGGGTCTTTTGATTCTGCTGTTCGAGGATGTGCTGGAGTTTTCCACACTGCTTCCCCTGTTATTTTCTCTGCGGCCGATCCTCAGTCC AATCTCAGGTACTTGTATACTGATCAGAGTTTGTATTCACAGAAGGAGATAGTGGATCCAACAGTAAAAGGGACGCTGAATGTACTAAAGTCATGTGCGA AGTCTCCGACCATCAAGAGAGTTATCGTCACCTCCTCCATTGCAACGATGTTCTTCACCGGGAAACCAGTCACCGGGGACTCCGTAGCTGACGAGACTTG GTTCTCCGACCCAGCAGTTTGCGAGAAACTTCAGATGTGGTACCAACTTGGCAAGACGTTGGCCGAGATATCCGCCTGGGATTTTGCAAAGGAGAATGGG ATTGACTTGGTCACAATGCTTCCTGGCATTGCGAATGGGCCATTTTTACAGCCAGCACCTACCTTCTCTGTTGACATAGTTCTCAACCTAGTTAACGGTA CAAGCGAGGAAACCGGATTCGACTGTTCATAA
AA sequence Show only first row Show all	>Lus10026152 pacid=23173200 polypeptide=Lus10026152 locus=Lus10026152.g ID=Lus10026152.BGIv1.0 annot-version=v1.0 MSGSSGEGKVVCVTGASGFIASWLVKLLLHHGYTVNATVRDPCDSKKTEHLVELDGAKERLHMFKAELLEEGSFDSAVRGCAGVFHTASPVIFSAADPQS NLRYLYTDQSLYSQKEIVDPTVKGTLNVLKSCAKSPTIKRVIVTSSIATMFFTGKPVTGDSVADETWFSDPAVCEKLQMWYQLGKTLAEISAWDFAKENG IDLVTMLPGIANGPFLQPAPTFSVDIVLNLVNGTSEETGFDCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	0	1
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	2.0	0.9183
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	2.2	0.9143
AT1G49975			unknown protein		Lus10006137 [exp]	2.8	0.9232
AT3G17930			unknown protein		Lus10042280 [exp]	4.2	0.9207
AT2G38570			unknown protein		Lus10014180 [exp]	7.3	0.9138
AT5G15802			unknown protein		Lus10008785 [exp]	8.1	0.8890
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	8.5	0.8927
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003521 [exp]	8.5	0.8769
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	8.9	0.8988
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	9.5	0.9092

Compare expression of checked genes

Lus10026152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.