Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09510 96 / 3e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 96 / 4e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 78 / 2e-17 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G42800 76 / 1e-16 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G68540 62 / 8e-12 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G15950 62 / 9e-12 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G25460 60 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 60 / 4e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33600 58 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 58 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014363 [exp] 88 / 3e-21 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 85 / 6e-20 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 84 / 6e-20 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019734 [exp] 81 / 1e-18 AT1G09480 286 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 81 / 1e-18 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 82 / 2e-18 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 80 / 4e-18 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 74 / 4e-16 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10041031 [exp] 70 / 1e-14 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057600 [exp] 94 / 1e-23 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 81 / 1e-18 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 79 / 8e-18 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.005G229500 [exp] 72 / 3e-15 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.008G120200 [exp] 71 / 8e-15 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G033600 [exp] 70 / 1e-14 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.010G125400 [exp] 68 / 7e-14 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G257700 [exp] 66 / 3e-13 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G415500 [exp] 62 / 1e-11 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G046100 [exp] 62 / 1e-11 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026153 pacid=23173285 polypeptide=Lus10026153 locus=Lus10026153.g ID=Lus10026153.BGIv1.0 annot-version=v1.0 ATGAGCGGAGAAAGGGAAAGTGGTGTGTGTAACAGGAGCTTCAGGGTTCATAGCATCATGGTTGGTCAAGCTTCTGATTCACCATGGATACACTGTCAAC GCTACTGTGACTCGAAGAAGACAGAGCATCTACTGAGGCTTGATGGAGCCAAGGAAAGACTGCATCTTTTCAAAGCAGACTTGCGGGAAGAAGGGTCTTT TGATTCTGCTGTTCAAGGGTGTGATGGGGTTTTCCACACTGCTTCCCCTGTTTCCTTCTCTGCCGCTGATCCTCGGTCTGAAACAAAATCTACCTCATGG AAGGGAGAATGTTCATATTGGTTGATCTTTCTTCTTGTTTGTAGATGTGATGAGATCGACAGTATCACAAAGGTGCCAGCTTTCAAGGCATCGAAGAAGA AGGCAGAAGAAGAGTTGGGAATGAAGTTCATTGACACTATTGAGTGCCTGAAAGAAAAGGGCTTCTTACACTTCTGA
AA sequence Show only first row Show all	>Lus10026153 pacid=23173285 polypeptide=Lus10026153 locus=Lus10026153.g ID=Lus10026153.BGIv1.0 annot-version=v1.0 MSGERESGVCNRSFRVHSIMVGQASDSPWIHCQRYCDSKKTEHLLRLDGAKERLHLFKADLREEGSFDSAVQGCDGVFHTASPVSFSAADPRSETKSTSW KGECSYWLIFLLVCRCDEIDSITKVPAFKASKKKAEEELGMKFIDTIECLKEKGFLHF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09490			NAD(P)-binding Rossmann-fold s...		Lus10026153 [exp]	0	1
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	6.9	0.9218
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10011630 [exp]	10.6	0.9065
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	14.6	0.9179
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	16.3	0.9045
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	16.3	0.9209
AT3G53400			unknown protein		Lus10019932 [exp]	28.2	0.9022
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	34.3	0.8963
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10023664 [exp]	35.1	0.8904
AT5G23750			Remorin family protein (.1.2)		Lus10008477 [exp]	36.2	0.8602
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	36.7	0.8763

Compare expression of checked genes

Lus10026153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.