Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12280 1165 / 0 RB1, RBL1, RBR1, ATRBR1 RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED PROTEIN 1, retinoblastoma-related 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008667 [exp] 1917 / 0 AT3G12280 1311 / 0.0 RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED PROTEIN 1, retinoblastoma-related 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031400 [exp] 1401 / 0 AT3G12280 1377 / 0.0 RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED PROTEIN 1, retinoblastoma-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF01858 [flax] [poplar] RB_A Retinoblastoma-associated protein A domain CL0065 [flax] [poplar] Cyclin PF11934 [flax] [poplar] DUF3452 Domain of unknown function (DUF3452) CL0065 [flax] [poplar] Cyclin PF01857 [flax] [poplar] RB_B Retinoblastoma-associated protein B domain
Representative CDS sequence Show only first row Show all	>Lus10026154 pacid=23173214 polypeptide=Lus10026154 locus=Lus10026154.g ID=Lus10026154.BGIv1.0 annot-version=v1.0 ATGGAAGATACTAAGCCTTCAACTGAGGTTTCCAATGATCCTAAAAGCAATGGAGGAGAAGTTGATGCCTTTGAAGTGCGGTTCAGGGAATTGTGCAAGA GTTTACTATCTTTGGACGAGAAGACTTCTGCAGAAGCTATGAGGCTTTTCAAAGCGACAAAGCATATTATGCTGTCTGGTGTTTCAGCTGTTGGAAATGG CACGCCTGAAGAAGTCGAAAGATTTTGGTCTGCGTTTGTACTGTATTCAGTGAAAAGGCTGTTCAAGAATACCGGAGACATGGAGCAGCAGCCATCATCC TATGACAATGGATTAACATTGTGCCAGATATTAAGATCTGCAAAGCTGAACTTCTTGGACTTCTTCAAAGAGCTGCCTCAATTTGTCGTGAAAGTGGATC CAATATTCACTAATATCTATGGTTCAGACTGGCAGAAGAGACTTGAGGCGAAGGAGTTGCAAGCCAATTTTGTGCACTTGAGCACTCTAAGCAGGCATTA CAAGCGTGCATATCAGGAACTTTTCTTGATGATTGATACAAATATTGACAAGGAACCAGCAGATTCTAGTGCCATATCATGTGCCTCAGACTATCATCGT TTCGGATGGATGCTGTTTCTGTGCCTCCGTGTACATGAATTGAATCATGTTAAGGATCTAGTGACTTGCATTAACGGATTGATTTCTGTACTGGCTATTC TGATTATGCATCTCCCAGTTCGGTTCAGAAAATTCAGCTTGAAGGACGATGGGTGGTTTGCTAAGAGAGGTGACAGAGGTGTTCAGTTGCTTGCATCCCT TTGCCATAAGTATGAGACATCGGAGGATGACCTCAATAAAATGATGGAGAAGACCAATAATTTATTAAGAGAGGTCCTGACGGGAAAACCTCAGATGGCT TCTGAATGTAAAAGTGAAAGCTTGTTAGACATAGATACAGAGGGTTTGATTTATTATGAAGGTTTGATGGAGGAATCATCCCTGGGGACAAGTCTGAATA CCTTGCAGAAGGATTATGATGAGGCCCTTCGTGCGAGTGGTGGTGATCTGGATGAGAGAGTTTTCATGGATGAGGATGTCAGCTTACTTGGTTCAGGAAG CCCATCTGCGAGTGCTAATAATATCGTTGGAAATAAGGTGAGTTCTGCTGAAGAGTGCTCATTCCTGAAAAGAAAGAGGAAAATTGATTTAGTATACTCA CCCACAAGAACGATTAGAAGTCCTCTTTCTCCTAACCGTTCTCCTGCACCCCATGCAAATGGAAGTCTCAATACTGAACACTCTAAGATGGCTCCGACTC CAGTAAGCACAGCAATGACGACAGCAAAATGGCTCCGAACTGTAGTATCTCCACTGCCACCTAAGCCTTCACCTCAGTTGGAGCGTTTCCTAGTATCATG TGATAGGGATGTTACGAATGAGGTGGCACGTAGAGCTTATATAATATTGGAAGCAATATTCCCGAGTAGCTCTCTGGGAGACCGTTGTGTGACTGGAGAT CTTCAAACGACAAATCTGATGGATAACATATGGGCAGAACAACGACGATTGGAAGCTCTCAAGCTGTATTATAGGGTTTTGGAGGCAATGTGTACTGCAG AGGCCCAAATTTTGCATGCAACGAATCTGACGTCTTTACTAACCAATGAAAGGTTCCATAGATGCATGCTCGCATGTTCAGCTGAACTAGTTTTGGCAAC ACACAAGACTGTTACAATGTTGTTTCCTGCTGTACTGGAGAGAACTGGCATCACAGCTTTTGATCTTGGCAAGGTAATAGAGAGTTTCGTTAGACACGAG GAGTCTCTTCCTAGAGAATTGAGGAGGCATTTGAATTCCTTAGAAGAGCGACTTTTGGAGAGTCTGGTCTGGGAAAAGGGTTCTTCATTGTACAATTCTC TAACAGTTGCAAGACCTGCACTCTCTGTGGAGATTAATCGTCTTGGGTTACTGGCTGAACCAATGCCATCTTTAGATGCAATTGCAATGCATATGAACCT TTCTTCAACGGGTCAAAATGGAGATATGAGGTCTCCGAAAAGGCCTTGTACAGACTACAGGAGTGTATTGGTCGAGCGAAATTCATTTACATCCCCGGTA AAGAGAAATTCCTTTACATCACCAGTAAAAGATCGGTTACTGGCCCTGAAGTCAAAACTGCCACCACCAGCACTCCAATCTGCGCTTGCCAACATATTCT TTGGCAAGATCAATAAGCTGGCTGCTGTCAGAATCAATGGCATGATCGAAAGGTTACAACTTTCGCAGCAGCACATAAGAGAGAATGTCTACTGTCTATT TCAGCAAGTACTCAGTCAACGAACATCTCTCTTCTTCAACCGCCACATTGATCAAATCCTCCTTTGTTGTCTCTACGGAATTGCAAAGATTTCAAAAGTC AACTTGACTTTTAAGGAAATCATTTACAACTATAGGAAGCAACCACAGTGTAAGCCACAAGTATTCCGCAGTGTATTTGTTGATTGGTCATCAGCACACC ACAACTCAAGGACAGGACAGGATCATGTCGATATAATCACATTTTACAATGAGATTTTCATCCCTGTCGCGAAAACTCTGCTTGTAGACATTGGTTCTGC TGCAACAATCGCTAGAGTTAATCAGGCCTCTGAAGTCAATAATAACAAAGATGGTCAATGTCCAGCATCTCCTAAAGTATCTCCATTTTCGACTCTCCCT GATATGTCTCCAAAGAAAGTATCGGCAGTACATAATGTCTATGTCTCGCCACTTCGAACGTCCAAGATGGATGCTCTGATATCACATAGTTCGAAAAGCT ATTACGCTTGTGTTGGGGAGAGCACTCATGCATACCAGAGCCCATCTAAAGACCTGACTGCTATCAATAACCGCTTGAATAGCAACCGGAAGGCGAAGGT ATCGCTAGCATTTGATGGTGCTGATGTCGGGTTGGTTAGTGATTCCATGGTGGCAAACAGCCTCAACCTGGAGAATGGAAATTGTGGATCTCCTATGAAA ACCGAGCAACAACCCAACTTGTAG
AA sequence Show only first row Show all	>Lus10026154 pacid=23173214 polypeptide=Lus10026154 locus=Lus10026154.g ID=Lus10026154.BGIv1.0 annot-version=v1.0 MEDTKPSTEVSNDPKSNGGEVDAFEVRFRELCKSLLSLDEKTSAEAMRLFKATKHIMLSGVSAVGNGTPEEVERFWSAFVLYSVKRLFKNTGDMEQQPSS YDNGLTLCQILRSAKLNFLDFFKELPQFVVKVDPIFTNIYGSDWQKRLEAKELQANFVHLSTLSRHYKRAYQELFLMIDTNIDKEPADSSAISCASDYHR FGWMLFLCLRVHELNHVKDLVTCINGLISVLAILIMHLPVRFRKFSLKDDGWFAKRGDRGVQLLASLCHKYETSEDDLNKMMEKTNNLLREVLTGKPQMA SECKSESLLDIDTEGLIYYEGLMEESSLGTSLNTLQKDYDEALRASGGDLDERVFMDEDVSLLGSGSPSASANNIVGNKVSSAEECSFLKRKRKIDLVYS PTRTIRSPLSPNRSPAPHANGSLNTEHSKMAPTPVSTAMTTAKWLRTVVSPLPPKPSPQLERFLVSCDRDVTNEVARRAYIILEAIFPSSSLGDRCVTGD LQTTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLGKVIESFVRHE ESLPRELRRHLNSLEERLLESLVWEKGSSLYNSLTVARPALSVEINRLGLLAEPMPSLDAIAMHMNLSSTGQNGDMRSPKRPCTDYRSVLVERNSFTSPV KRNSFTSPVKDRLLALKSKLPPPALQSALANIFFGKINKLAAVRINGMIERLQLSQQHIRENVYCLFQQVLSQRTSLFFNRHIDQILLCCLYGIAKISKV NLTFKEIIYNYRKQPQCKPQVFRSVFVDWSSAHHNSRTGQDHVDIITFYNEIFIPVAKTLLVDIGSAATIARVNQASEVNNNKDGQCPASPKVSPFSTLP DMSPKKVSAVHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKAKVSLAFDGADVGLVSDSMVANSLNLENGNCGSPMK TEQQPNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	0	1
AT1G06590			unknown protein		Lus10034176 [exp]	1.7	0.8975
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	2.6	0.8681
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	3.6	0.8533
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	4.2	0.8560
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	4.9	0.8884
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	6.3	0.8808
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	6.5	0.8727
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10013716 [exp]	6.8	0.8311
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	11.8	0.8252
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	12.0	0.8533

Compare expression of checked genes

Lus10026154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.