Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79400 238 / 2e-72 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT1G16380 236 / 1e-71 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT3G52080 162 / 7e-45 CHX28 cation/hydrogen exchanger 28 (.1) AT2G13620 158 / 3e-43 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 142 / 1e-37 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT1G06970 133 / 1e-34 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G41610 133 / 2e-34 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT2G31910 123 / 3e-31 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G53720 120 / 3e-30 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G30240 120 / 4e-30 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024131 [exp] 402 / 3e-136 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024132 [exp] 337 / 6e-110 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10008666 [exp] 314 / 1e-107 AT1G79400 162 / 3e-45 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10016403 [exp] 159 / 1e-43 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10019716 [exp] 159 / 2e-43 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10035312 [exp] 157 / 1e-42 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 155 / 2e-42 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10029506 [exp] 154 / 8e-42 AT3G52080 850 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10032332 [exp] 138 / 2e-36 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194200 [exp] 337 / 2e-110 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 329 / 3e-107 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.007G105200 [exp] 168 / 6e-47 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.009G059400 [exp] 167 / 2e-46 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.003G134900 [exp] 145 / 1e-38 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G264600 [exp] 134 / 8e-35 AT3G52080 710 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.013G142301 [exp] 132 / 2e-34 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 132 / 2e-34 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G111400 [exp] 131 / 8e-34 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G183000 [exp] 125 / 7e-32 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026155 pacid=23173300 polypeptide=Lus10026155 locus=Lus10026155.g ID=Lus10026155.BGIv1.0 annot-version=v1.0 ATGTACCACCAGTTGAAAGACGGGGACCAATTCAGCGACGAAGAAGAGTACGGAGGGAACGACGTCGTCGAGATCAACGACGCGGTGGATTCATTCTCCG CCGACACGAAATTCCTCATCCGCCAATCGAAGGTCGTCTCCACTTTCAACTCCTTGTTCGAGGACGTGTGCGGCGCCGTGGACGATCTCCGGATCTCGAT CATTTTCTTAACGTTCCACAAGCACCAGCGGCTGGACGGGAAGCTGGAGAGAGGGAAGCCAGGGGTACGGACGACGAACCAGAAGGTTCTGCGGCAGGCG GCGTGCTCGGTTGGGATATTCGTCGACAGAGGACAGACCGGATTCCAGATGCCGTCGCCGGACCATGTGCAGAACGTGGCGGTGATTTTCTTCGGCGGGC CGGACGACAGGGACGCGGTAGCGTGTGGCAAGCGGATGGCGACGCATCCGTTCGTACGGATGACGCTGGTGAGATTTCTTCCGGCGGAGGAGGATGCTGA GGCGGCGGAGAAAGGAGAATACGAAGGGAGGAGTAGCAGTCAGCGGAGCCAGGAGGAAGAAGTGTTGATGGAGATGCCGGAGGTGGAAGGGGAGATGGAT AATGCCTGCATCAACGATTTCTACAACAGGTATGTAGCAGAAGGGAAAGTTGAATACGAAGAGATGGAAGTGAAAGATGGAAAGGAAACAGTAGAGGTAC TGAAAGAGATTGGGGGAATGTATTCATTGTTCATAGTTGGGAAAGGAGGAGGTGGAGGTAGCTCTAGTTTGGCCGCCATGACCAGAGATATGAGCGATTG GGAAGAATGTCCAGAACTTGGAACTGTGGGAGATCTGTTAGCTTCTACTGAGATCACCAGCATCAATGCTTCAGTATTGGTCATCCAACAGTATCGTCGT TCTCCTTCTCAAATACGAGACTGA
AA sequence Show only first row Show all	>Lus10026155 pacid=23173300 polypeptide=Lus10026155 locus=Lus10026155.g ID=Lus10026155.BGIv1.0 annot-version=v1.0 MYHQLKDGDQFSDEEEYGGNDVVEINDAVDSFSADTKFLIRQSKVVSTFNSLFEDVCGAVDDLRISIIFLTFHKHQRLDGKLERGKPGVRTTNQKVLRQA ACSVGIFVDRGQTGFQMPSPDHVQNVAVIFFGGPDDRDAVACGKRMATHPFVRMTLVRFLPAEEDAEAAEKGEYEGRSSSQRSQEEEVLMEMPEVEGEMD NACINDFYNRYVAEGKVEYEEMEVKDGKETVEVLKEIGGMYSLFIVGKGGGGGSSSLAAMTRDMSDWEECPELGTVGDLLASTEITSINASVLVIQQYRR SPSQIRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026155 [exp]	0	1
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	2.6	0.7421
					Lus10032433 [exp]	11.9	0.7206
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	19.1	0.6834
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	20.8	0.6896
AT1G58025			DNA-binding bromodomain-contai...		Lus10036580 [exp]	24.5	0.6050
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	25.9	0.6543
					Lus10038255 [exp]	26.5	0.6804
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	27.2	0.6833
					Lus10042417 [exp]	28.8	0.6728
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	32.4	0.6587

Compare expression of checked genes

Lus10026155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.