Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79400 357 / 9e-115 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT1G16380 345 / 2e-110 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT5G41610 180 / 5e-49 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT2G13620 177 / 7e-48 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G17630 174 / 6e-47 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 149 / 3e-38 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 139 / 7e-35 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G64170 122 / 4e-29 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G05580 116 / 2e-27 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G52080 116 / 3e-27 CHX28 cation/hydrogen exchanger 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024131 [exp] 630 / 0 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024132 [exp] 461 / 4e-155 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10005382 [exp] 439 / 8e-149 AT1G79400 342 / 8e-108 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10030013 [exp] 185 / 2e-50 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 184 / 5e-50 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 166 / 4e-44 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 162 / 2e-42 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 140 / 3e-35 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10004932 [exp] 134 / 3e-33 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194200 [exp] 538 / 0 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 504 / 3e-172 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.013G142301 [exp] 196 / 2e-54 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 195 / 4e-54 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G105200 [exp] 187 / 1e-51 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G004800 [exp] 171 / 1e-45 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 169 / 3e-45 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G134900 [exp] 156 / 9e-41 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.019G123700 [exp] 156 / 2e-40 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 148 / 8e-38 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10026156 pacid=23173284 polypeptide=Lus10026156 locus=Lus10026156.g ID=Lus10026156.BGIv1.0 annot-version=v1.0 ATGGACGCGGCGAAAAGGGCAATATGCCAAGCTGATCCGTTCAACCCGCTAATATCGTCTACGATGCAAGCCTCTGGGATCCTCGTCATCTCCCATTTCT TCAACCTCATCTTGAAACCTCTCGGCCAGCCCGGTCCCGTCGCCCAAGTCTTGGCAGGAATGGTACTGGGACCATCACTACTCTCCCGAATCCCGCAAGT GAGAGAGTTCTTCATCCAAACCTCATCAGCAGACTACTACGAAGTGTTCTCCCTAGTCTTCTGTGTCCTCTTCATCTTCCTCATCGCCCTCGAAACAGAT GTCTCCTACATCAGACGAAACCTCCGCAAGTCCATCACCATCGCCTACGCAGGCCTGATCGTCTGCAGCATCTTCGGCATCGCCCTCTCCCTCTTCATCA TCGAATCCGTCAAGGTAACCTCCCACCAAATCGCCCTGACAAACTTCATCATGATCATCCTCTCCAACACTGGCGCCCCCGTAGTCATCCGACTGGCAGC CGAGCTCAAATTTGCCACTGCAGAAGTAGGCCGCTTAGCAGTATCCGCATCTTTAGTCTGCGAGATGTCCTGCGTCCTCTGGTTCAGCATTTTCCTCCTA TTCGTCTCGAAACACATGCTCTGGAAAGGATGCCTCTTCCTCTTCGCCACCATGGCGCTAGTTGTGGTCAACATGTACCTTGTGGCCTGGTGCAATAGAA GGAACCAGAATCAGAAGTATGTGACGAACGCGGAGGTTTTGGTGTTCTTGTTTCTGGTGATGGGGCTGGCGTTTTTGATCGAGGCGTCGGGGTTTAACTC GACGATCTCGACGTTTGTTGTAGGGTTGATGTTTCCTAAGCAAGGGAAGAGTACCAGGACTTTGGTGAGGAAGCTGAGCTATGCTGTTCATATATTCGTT CTTCCGATTTTTTTCGGATATACTGGATTTCAGTTCAATGTGGCGTACCTTTCAAGCTTCAGGAATGTGATTGTGGTTGTGCTGGTGATGTTTCTGAGTA CTGGTGGCAAAATCATTGGCACTCTTATAGCTTGTCGATACTTGAAGATCCCCACCAGTGAAGGTGTTGTTCTTGCCTTTCTCCTCAATTTGAAAGGCCA TCCTGAACTTCTGCTCATCGGAAATTTGCCGAAAGCTCTTTTGACGTCGTGGCACGCGCAAGACATCTACAGCCTAGTGGCGACGGTGACCGTCCTGAAC ACGGTGATATCCGGGCCGGCGGCGGCGTTCGTGCTCCGGAAAGAAGAGAAATACTTCGCTCACAAGCATACCACCTTGGAACGCTACTCCGCTGACAGCG AGCTTCGGATCCTGGCCTGCGTCTACGGATCGCGCCATATCTCCGCCAAGATCGGCCTGATCTGGGCGCTCTGCGGCGGCTCATCCGCCTCCGGCACTGT TCCAGTCACAGCCTACATGACTCCGACCCGCATCCACCTCATACCCCCCCCGAGCTCGGCCGTGTCTGGGCGCTCTGCGGCGGCTCATCCGCCTCCGGCA CTGTTCCAGTCACAGCCTACATGA
AA sequence Show only first row Show all	>Lus10026156 pacid=23173284 polypeptide=Lus10026156 locus=Lus10026156.g ID=Lus10026156.BGIv1.0 annot-version=v1.0 MDAAKRAICQADPFNPLISSTMQASGILVISHFFNLILKPLGQPGPVAQVLAGMVLGPSLLSRIPQVREFFIQTSSADYYEVFSLVFCVLFIFLIALETD VSYIRRNLRKSITIAYAGLIVCSIFGIALSLFIIESVKVTSHQIALTNFIMIILSNTGAPVVIRLAAELKFATAEVGRLAVSASLVCEMSCVLWFSIFLL FVSKHMLWKGCLFLFATMALVVVNMYLVAWCNRRNQNQKYVTNAEVLVFLFLVMGLAFLIEASGFNSTISTFVVGLMFPKQGKSTRTLVRKLSYAVHIFV LPIFFGYTGFQFNVAYLSSFRNVIVVVLVMFLSTGGKIIGTLIACRYLKIPTSEGVVLAFLLNLKGHPELLLIGNLPKALLTSWHAQDIYSLVATVTVLN TVISGPAAAFVLRKEEKYFAHKHTTLERYSADSELRILACVYGSRHISAKIGLIWALCGGSSASGTVPVTAYMTPTRIHLIPPPSSAVSGRSAAAHPPPA LFQSQPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	0	1
					Lus10004778 [exp]	2.2	0.9363
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10002070 [exp]	3.7	0.8692
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	4.0	0.9111
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	6.0	0.8853
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	6.2	0.9043
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	6.5	0.8872
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	8.0	0.8976
					Lus10014515 [exp]	8.0	0.8858
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	8.2	0.8638
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	8.9	0.8665

Compare expression of checked genes

Lus10026156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.