Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29940 1574 / 0 NRPA2 nuclear RNA polymerase A2 (.1) AT5G45140 436 / 3e-133 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 320 / 3e-91 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G18090 276 / 7e-77 NRPD2B nuclear RNA polymerase D2B (.1) AT3G23780 273 / 2e-75 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) ATCG00190 118 / 1e-26 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028778 [exp] 404 / 3e-120 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10015446 [exp] 379 / 4e-112 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10017504 [exp] 367 / 1e-108 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10011182 [exp] 365 / 5e-107 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10039677 [exp] 247 / 6e-67 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10011322 [exp] 198 / 8e-54 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10027166 [exp] 201 / 3e-52 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10012207 [exp] 56 / 2e-09 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 45 / 0.0002 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030750 [exp] 1746 / 0 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.015G003000 [exp] 423 / 2e-128 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 385 / 2e-114 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.018G019100 [exp] 269 / 4e-74 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.013G142232 [exp] 116 / 5e-26 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1) Potri.006G263900 [exp] 97 / 6e-22 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF06883 [flax] [poplar] RNA_pol_Rpa2_4 RNA polymerase I, Rpa2 specific domain PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 CL0410 [flax] [poplar] LEF-8-like PF00562 [flax] [poplar] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6
Representative CDS sequence Show only first row Show all	>Lus10026157 pacid=23173277 polypeptide=Lus10026157 locus=Lus10026157.g ID=Lus10026157.BGIv1.0 annot-version=v1.0 ATGGCGAAGAATGGGCAGAAATCGTCGTGGGCATGGGGGGACTACAAAGAGCTGGAGGGGCTGGTGAAGCACCATATCGACTCCTTCAATTACATGGCCG CCCGAGGTCTTGAAGTTATGATGGAGAATATCGCACCGATTGCACTGTCCTTCAGTAATCCCAAGCTGCATTACCCTCAGAAGGAAAGCAGTTCAAGGAC TGCGCTCAACACACTCTACCCCTCTGAATGTAGACAAGCAAAGATTTCCTACACAGGAAAGTTGGAAGCGGATGTGTGCTTCCAATATAATGACAGAGCT GTTGTAAGAGAATCTATCCACTTTGGGCAGTTCCCCATTATGCTAAAGTCAATTTGCTGCCAGTTGCGAGGTGCGGATCCAAAAAAGCTGGTGGCTCTCA AGGAAGAGTCAGCTGAACTGGGAGGGTATTTCATTCTTAATGGGCTTGAAAGAGTTGTTCGCCCTTTGATATTGCAGAAAGCAAATTATCCCATGAGTAC AGTGAGGGACTCATTTCGTGACCGGAGTGAAGGCTACAGCAATAAAGCAGTGGTGATAAGGTGCGTGAGGGAGTTCCAGTCCTCCTTAACAGATCAATCT TCAGTAACAATTAAACTTTATTACCTTCATAATGGAAGTGCAAGACTTGGAGTTTGGATACAAGGTCGCGAGTATCTACTCCCTGTTGGAATTGTCCTGA AGGCCTTCATTCAAACCACTGACCGGGAAATCTATCAGCAATTAACTTCTTGCTATAGGGATGGACAGGAGAAGGGAAAGGGTGCTGTTGGCTCACAGTT AGTAGGTGAAAGAGCGAAAATTATACTTGAAGAAGTTCGAGACATGGCTCTTTTCACCCACGATGACTGCCTGCGCCACATTGGGGAGCACTTCCAACCT GTTATGGAGGGCTTGGAGAATGAACCAGCATCGACTGTGGGACATGCAGTTCTGAAGAACTACATACTTGTACATCTCACTAATCTAGATGACAAGTTCA ATCTGCTCATGTTAGGATATTCTCCTCTTTTGTGCCGTTCCTATTTTATTCCTTGTGTTGGGATGGTTTTAACGTCATGTCTCCTCTTTAGTTTCATGTT GCAGAAGCTTTTCTCTCTAGTAGACCGAAATTCAGAAGCAGACAACCCAGATGCCCTGCACAACCAGGAGATTTTACTCCCGGGGCACATCATGACCATA TATTTGAAGGAAAAACTTGAAGAGTTGTTACGCTCGGCGAAAAAGAACATTCAAGCGGAGATTAAAAATAAAAGCAAGTTTAATTTCTTGTCAGTACCGG ATATCAAGAAGCAGATAGATAAGGCCCAGCCATCCTCGATCAGTCCAAAAATAGCGAGTATGCTAACGACTGGATCGCTGAACACTCAAACAGGTCTAGA TTTGCAACAGAAAGACAACTTCTTTGAGTTGCACATTGTTTACAACGTCATATGTGATAATAGCCTTAGCGAGAATAGGGCAGGCTTGACGGTTCAAGCT GAGAGGCTAAACTATCTGCGATTTCTCTCTTTCTTCAGATCTGTTCACCGAGGTGCTACCTTTGCTGGTCTTCGTACAACTAGTGTCCGGAAACTATTGC CAGAGTCATGGGGTTTCCTCTGTCCAGTGCACACTCCTGATGGGGAACCATGCGGGTTGCTGAACCATATGACTTATTGTTGTCGAATAACATCATTCTT TGATCCACAAGGACACATTAAGGACTTCTTTGAGATAAGAAAGTCTATTCTTGGAGTTCTCACAGGACTTGGAATGACCTCTTCATTGCCCAGGATATCT CAAGCTGGCCCTCCTCAAGCTCTCTCTGTTCTGTTAGATGGTAGAGTTGTTGGCTCCATAAATGCGAGTAATATTGAGAAAGTTGTCAGTAGTTTAAGAA GATTGAAAGTATCAGCTGCTTCCACGATCCCTGATGACCTTGAAGTTGGGTATGTTCCTCTTAGCATGGGTGGGGCATACCCTGGTTTGTACTTGGCTAC TTCTCCTTCAAGATTCATTCGCCCTGTGAGAAATATTTCAATCCCTCCCGAGGATGGTCGAGATACTGAACTTATTGGACCATTTGAACAGGTGTTTATG GAGATAAGGTGCCCAGATGGGGGAAATGGTGGAAGAAATGATGCATTTCCTGCGACTCATGAAGAAATTCATCCAACTGGAATGCTTAGTGTTGTTGCTA ATCTTACTCCTTGGTCTGATCATAATCAGAGTCCAAGGAATATGTACCAGTGTCAGATGGCAAAGCAAACAATGGGGTATTCTCTTCAGGCTTTGCGCTT CCGTGCAGATCAGAAACTCTATCATCTTCAGACCCCCCAAACCCCTATTGTACGTACGAGTACATATCCCAAGTACTGCATAGATGAGTATCCAACAGGG ACGAATGCAATAGTTGCTGTGCTTGCTTACACAGGATATGATATGGAGGATGCCATGATACTCAACAAGTCCTCTGTAGAACGCGGGATGTGTCATGGAA CAATATACCAGACTGAAACTGTTGACTTGGCTTCGTCGAAGCAACCCGGTCAGATATTTAAGAGAAGTAACGACATCAGAGACCGTAAATGCCTTGATGT GGATGGACTTCCGTATGTTGGTCAGATATTGCATCCGGGAGATCCCTATTGTAACGTCCATAATACAATTGAATCCAGAACAAGATCCTTGAAGCAGAAG GGCTCAGAAGTTTCATACGTTGACTTCGTTGCTCTAGATATGAAGAAGGAGAGTCGAAAGGCAATCATACGGTCTCGACATCCGAGAAACCCTGTCATCG GTGACAAATTTAGTAGCAGGCATGGACAAAAGGGTGTTTGCTCCCAACTGTGGCCGGATATTGACATGCCATTTTCCGGTGCTACCGGCATGCGTCCTGA TTTGATTATAAACCCTCATGCGTTTCCTTCACGAATGACAATCGGAATGCTCTTGGAATCTCTTGCTGCTAAGGGTGCTACTTTGAATGGCAAGTTTGTG GATGCAACGCCATTTGCGAGTTCAATGAAGAAAGACGGTGGATCTGAAGCTGAATCACTTGTTGATGATCTTGGTGAAGCGCTGAAGTCTCATGGCTTTA ATTATCACGGTGTAGAGGTGCTATACAGCGGAGTATACGGCACAGAGTTGACATGTGAAATTTTCATCGGCCCGGTCTACTATCAACGCCTTCGGCATAT GGTTTCAGACAAATTCCAGGTGAGGGCAACCGGAGAAGTGGATCAAATCACGAGACAGCCGATTAAAGGAAGAAAGCGCCATGGTGGTATCCGTTTCGGA GAAATGGAAAGGGATTCCCTAATTGCTCACGGGGCGTCGTATTTGCTGCACGACAGGCTGCATACATGTTCTGACTATCACATAGCAGACGTATGCTCGA TATGTGGGAGTCTTCTGACCACGACATTCATCCAACCGCACAAGAGGCTGGCGAGGCTTAATGGACGGTTCCCTCCCCCGAACCCGAAGAAAGTAGCTTG CCATGCGTGTAAGAACAGCAGAGGGATGGAGACTGTTGCAATGCCTTATGTTTTCAAGTACCTGGCAGCTGAATTGGCTGCTATGAACATTAAAATGACC CTCAATCTCACTGATGGTGCTTGA
AA sequence Show only first row Show all	>Lus10026157 pacid=23173277 polypeptide=Lus10026157 locus=Lus10026157.g ID=Lus10026157.BGIv1.0 annot-version=v1.0 MAKNGQKSSWAWGDYKELEGLVKHHIDSFNYMAARGLEVMMENIAPIALSFSNPKLHYPQKESSSRTALNTLYPSECRQAKISYTGKLEADVCFQYNDRA VVRESIHFGQFPIMLKSICCQLRGADPKKLVALKEESAELGGYFILNGLERVVRPLILQKANYPMSTVRDSFRDRSEGYSNKAVVIRCVREFQSSLTDQS SVTIKLYYLHNGSARLGVWIQGREYLLPVGIVLKAFIQTTDREIYQQLTSCYRDGQEKGKGAVGSQLVGERAKIILEEVRDMALFTHDDCLRHIGEHFQP VMEGLENEPASTVGHAVLKNYILVHLTNLDDKFNLLMLGYSPLLCRSYFIPCVGMVLTSCLLFSFMLQKLFSLVDRNSEADNPDALHNQEILLPGHIMTI YLKEKLEELLRSAKKNIQAEIKNKSKFNFLSVPDIKKQIDKAQPSSISPKIASMLTTGSLNTQTGLDLQQKDNFFELHIVYNVICDNSLSENRAGLTVQA ERLNYLRFLSFFRSVHRGATFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTYCCRITSFFDPQGHIKDFFEIRKSILGVLTGLGMTSSLPRIS QAGPPQALSVLLDGRVVGSINASNIEKVVSSLRRLKVSAASTIPDDLEVGYVPLSMGGAYPGLYLATSPSRFIRPVRNISIPPEDGRDTELIGPFEQVFM EIRCPDGGNGGRNDAFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMGYSLQALRFRADQKLYHLQTPQTPIVRTSTYPKYCIDEYPTG TNAIVAVLAYTGYDMEDAMILNKSSVERGMCHGTIYQTETVDLASSKQPGQIFKRSNDIRDRKCLDVDGLPYVGQILHPGDPYCNVHNTIESRTRSLKQK GSEVSYVDFVALDMKKESRKAIIRSRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGATGMRPDLIINPHAFPSRMTIGMLLESLAAKGATLNGKFV DATPFASSMKKDGGSEAESLVDDLGEALKSHGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRATGEVDQITRQPIKGRKRHGGIRFG EMERDSLIAHGASYLLHDRLHTCSDYHIADVCSICGSLLTTTFIQPHKRLARLNGRFPPPNPKKVACHACKNSRGMETVAMPYVFKYLAAELAAMNIKMT LNLTDGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	0	1
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	1.4	0.9456
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	3.5	0.9401
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	4.0	0.9369
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	4.2	0.9430
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	6.7	0.9298
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	6.9	0.9005
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	10.7	0.9326
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	12.0	0.9195
AT5G45190			Cyclin family protein (.1.2)		Lus10036191 [exp]	12.2	0.8650
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	13.0	0.9323

Compare expression of checked genes

Lus10026157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.