Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12270 565 / 0 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT2G19670 194 / 2e-56 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G20020 193 / 4e-55 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT4G29510 191 / 6e-55 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT1G04870 133 / 6e-34 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G06930 128 / 3e-31 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 121 / 5e-29 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008664 [exp] 1033 / 0 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10000982 [exp] 191 / 1e-54 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 190 / 4e-54 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10017367 [exp] 187 / 1e-52 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10010162 [exp] 184 / 2e-52 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10008577 [exp] 175 / 6e-48 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10043295 [exp] 124 / 1e-30 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 123 / 3e-30 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043412 [exp] 121 / 9e-29 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030200 [exp] 661 / 0 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.006G149400 [exp] 186 / 9e-53 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 184 / 3e-52 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 184 / 4e-52 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.018G071200 [exp] 132 / 1e-33 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.010G014600 [exp] 113 / 3e-26 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 111 / 9e-26 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.014G004000 [exp] 76 / 1e-15 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026158 pacid=23173158 polypeptide=Lus10026158 locus=Lus10026158.g ID=Lus10026158.BGIv1.0 annot-version=v1.0 ATGGCCGACAACGAGTACCATTCTACTGAAGAAATCAGAGGAGCCCACAAAAGTATTACCCCAGATCAAGACATGGAAGAACAAGAAGAGGAAGAAGTTG AAGAAGACGATGACAAAGACTGGAACGATTGGGGAGAGGATGGAGATGAAGAACTTGACTCCAACTTCGTCTGTTTATTCTGCGTCTCCATGTACACTTC CTCCCACGAGCTGTTTCAGCACTGTCGCTCAGCTCACAAGTTCTATTTCGATGGGATAAGAAAAGCGTTGGGCTTGGATTTCTATGGTACTTTCAAGCTT ATCAACTACGTCCGCTCTCAGGTGGCCGAAAACAGATGCTGGAATTGTGGGGTTACTTGCGAATCCAGGGAGGACTTGCAGTGTCATTTACATGAACCAG CCAATTTGAAGAATATCAAGCTTTTGTTGGATGATGACAAGTATTTAAAACCTTTTATGCAAGATGATATACTCCTGCACAGTTTTGAAGATGAAGATTC TGAGGATGATTATAAAGCTTCACTTGACAAAGAAGAAATCATGAGCCTTCTGGGGGATGTGGAAATGCTCAATACAGATGAAGTTAATAGTAAGCAAAAC GGAACCAAAGAGCATGCCTCCTCTTCTTCAAATGGTCAGGATAGTGCCTCTACTACTATGAAGAGTGCAATGGTAAATGGTAGCAGCGCTGGGGAACGTG TTGCATCAGATGAAGCTTCAGATAGGCATTTGAAGAAGTCTATTGTTAACCTCTCTGCAAATGTTAAGAAAGTGAACGAGGGTTATTTTGGTGCCTACAG CTCTTTTGGGATTCATAGAGACATGATAAGTGATAAGGTAAGGACTGATTCTTATAGGCAAGCACTCGTGCAAAATCCTTCTCTCTTGAAGGGTGCTGTT GTGATGGATGTCGGCTGTGGAACTGGCATCTTGAGGCGAGTATTCTTCGACATAGTTTCCCCTATCCTTTCTTCAGTTCTAGCTTTCCTCTTTGCAGCCC AAGGTGGTGCTTCAAGAGTAATATCAGTTGAAGCCAGTGAGAAGATGGCTTCTGTTGCAACACGGATTGCTAAAGACAATAACCTTTGGAGAACTGAAAC TGAAGGCAATATCACTGGTGTCATGGAGGTGGTTCAAAGCATGGTTGAAGAAGTTGATAAATCCATAAAAATCGAGCCACACAGTCTCGATGTACTAGTG AGTGAATGGATGGGATATTGCCTACTCTACGAGTCAATGCTCGGTTCAGTGCTATTCGCAAGGGATAAATGGTTGAAGCCAGGCGGTGCTATTCTACCCG ATACAGCAACTATGTATGTTGCGGGGTTTGGAAGAAGTTGCACTAGTCTTCCATTCTGGGAAGATGTGTATGGCTTCAACATGTCTTGTGTCGGAAACGA GCTTGTTCAAGATGCAGCTCGAATCCCCGTTGTTGATGTTGTGCAAGAATCGGATCTGGTTACTCACGCCTCGGTCCTTCAGAAATTTGATCTGGCGACT ATGAAACCAGACGCTGTGGACTTTACAGCCGCAGTCGAGTTAGAACCGAAATCTGAACAAACCTTGTGTTACGGAATTGTGATCTGGTTCGATACCGGGT TTACCTCCAGATTCTGCAACGAAGCACCGGCTCTTCTATCTACATCTCCTTACACCCCGAAGACACATTGGTGCCAGACCCTACTCACCTTGCGGGAGCC AATAGCACTCGCTCCGACAGGAAAACTCCAACTGCGCATCAGCATTGTCCGAGGTACAGAACATCGAAGCATCGACATCTCTGCGGAGGCTGCTGCAGTT GGTCCTGACGGCAGGAAACACAGCTTCCCCGCACAAATGTTCACAATGACTTAA
AA sequence Show only first row Show all	>Lus10026158 pacid=23173158 polypeptide=Lus10026158 locus=Lus10026158.g ID=Lus10026158.BGIv1.0 annot-version=v1.0 MADNEYHSTEEIRGAHKSITPDQDMEEQEEEEVEEDDDKDWNDWGEDGDEELDSNFVCLFCVSMYTSSHELFQHCRSAHKFYFDGIRKALGLDFYGTFKL INYVRSQVAENRCWNCGVTCESREDLQCHLHEPANLKNIKLLLDDDKYLKPFMQDDILLHSFEDEDSEDDYKASLDKEEIMSLLGDVEMLNTDEVNSKQN GTKEHASSSSNGQDSASTTMKSAMVNGSSAGERVASDEASDRHLKKSIVNLSANVKKVNEGYFGAYSSFGIHRDMISDKVRTDSYRQALVQNPSLLKGAV VMDVGCGTGILRRVFFDIVSPILSSVLAFLFAAQGGASRVISVEASEKMASVATRIAKDNNLWRTETEGNITGVMEVVQSMVEEVDKSIKIEPHSLDVLV SEWMGYCLLYESMLGSVLFARDKWLKPGGAILPDTATMYVAGFGRSCTSLPFWEDVYGFNMSCVGNELVQDAARIPVVDVVQESDLVTHASVLQKFDLAT MKPDAVDFTAAVELEPKSEQTLCYGIVIWFDTGFTSRFCNEAPALLSTSPYTPKTHWCQTLLTLREPIALAPTGKLQLRISIVRGTEHRSIDISAEAAAV GPDGRKHSFPAQMFTMT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	0	1
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	1.7	0.9587
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	3.5	0.9171
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	3.5	0.9139
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	4.0	0.9134
AT4G28200			unknown protein		Lus10003351 [exp]	4.9	0.9246
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	5.0	0.9140
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	5.7	0.9059
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	6.6	0.9169
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	8.1	0.9097
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	8.7	0.8957

Compare expression of checked genes

Lus10026158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.