Plant FIBer expression Database

Lus10026159 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65000 119 / 2e-36 unknown protein
AT5G38060 42 / 8e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008663
[exp]
142 / 4e-40 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1)
Lus10009105
[exp]
46 / 6e-07 AT5G38060 161 / 6e-52 unknown protein
Lus10004070
[exp]
44 / 2e-06 AT5G38060 164 / 5e-53 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G078866
[exp]
119 / 2e-36 AT1G65000 118 / 2e-36 unknown protein
Potri.017G122500
[exp]
51 / 4e-09 AT5G38060 162 / 2e-52 unknown protein
Potri.009G062400
[exp]
39 / 0.0003 ND /
PFAM info
Representative CDS sequence
>Lus10026159 pacid=23173296 polypeptide=Lus10026159 locus=Lus10026159.g ID=Lus10026159.BGIv1.0 annot-version=v1.0
ATGGAGAAACAAGAAGGACGAATAATCGAGGAAGAGAAAGTATGCCGGCGATGCAAGCAGAGCTTCACTCGCTCTTCCAATAGCTCCTCCGCCTGCCGCT
TCCACCCTTCCTTCTTCGTCTGCCGTCGCCACGACGATCAGAAAAGGTCTATATACTCTCCGATTGAAAACTCCTTCTTCCTGCTGTATCGGATGTCGTT
ACCCTTCTCCGGCGAAACATTTCTGTCTGATCGTGTTCTGAAGTATTATGAGCTAGGGCCAAATGATCCACCGTATGCTGCGAAATTCTACGACTGTTGC
GGAGCTGAGCAACCTGAAGCACCAGGATGTTCCACCGCTTTCCATCTCTCGTACGACGATGATTGA
AA sequence
>Lus10026159 pacid=23173296 polypeptide=Lus10026159 locus=Lus10026159.g ID=Lus10026159.BGIv1.0 annot-version=v1.0
MEKQEGRIIEEEKVCRRCKQSFTRSSNSSSACRFHPSFFVCRRHDDQKRSIYSPIENSFFLLYRMSLPFSGETFLSDRVLKYYELGPNDPPYAAKFYDCC
GAEQPEAPGCSTAFHLSYDDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65000 unknown protein Lus10026159
[exp]
0 1
AT3G04570 AT-hook AHL19 AT-hook motif nuclear-localize... Lus10042551
[exp]
3.2 0.6301
AT1G72490 unknown protein Lus10013160
[exp]
3.9 0.7014
AT3G59650 mitochondrial ribosomal protei... Lus10022178
[exp]
10.1 0.6989
AT5G53500 Transducin/WD40 repeat-like su... Lus10011313
[exp]
12.2 0.6223
AT3G09430 unknown protein Lus10000245
[exp]
17.7 0.6915
AT3G20240 Mitochondrial substrate carrie... Lus10034806
[exp]
17.7 0.6793
AT1G01420 UGT72B3 UDP-glucosyl transferase 72B3 ... Lus10005334
[exp]
24.5 0.6581
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10027322
[exp]
38.2 0.6171
AT3G07970 QRT2 QUARTET 2, Pectin lyase-like s... Lus10038344
[exp]
43.4 0.6267
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Lus10039010
[exp]
44.6 0.6682

Lus10026159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.