Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06970 1370 / 0 Protein of unknown function (DUF810) (.1) AT4G11670 431 / 1e-132 Protein of unknown function (DUF810) (.1) AT2G20010 386 / 2e-117 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 373 / 2e-112 Protein of unknown function (DUF810) (.1) AT1G04470 352 / 2e-104 Protein of unknown function (DUF810) (.1) AT2G33420 352 / 3e-104 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008663 [exp] 1834 / 0 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 434 / 7e-133 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 410 / 3e-126 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 409 / 1e-125 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10023742 [exp] 350 / 5e-103 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 318 / 5e-93 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008431 [exp] 209 / 7e-58 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 207 / 7e-58 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 202 / 2e-56 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030100 [exp] 1542 / 0 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 498 / 3e-157 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 414 / 2e-127 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 406 / 1e-124 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 369 / 2e-110 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 364 / 3e-109 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 343 / 5e-101 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10026160 pacid=23173267 polypeptide=Lus10026160 locus=Lus10026160.g ID=Lus10026160.BGIv1.0 annot-version=v1.0 ATGGAGATGTGGGTTTGGAATGTTATTAGTGAAAATGCGGTCGAGCTTCTGCAAAGGTACAGGCGGGACAGGCGTATACTTATGGACTTTATACTTTCTG GAAGTTTGATTAAGAAAGTTGTTATGCCTCCCGGGGCTGTTACGCTGGATGATGTGGATCTTGACCAAGTTAGTGTAGATTATGTTCTCAATTGTGCCAA AAAAGGCGGCATGCTTGAACTCTCTGAAGCTATAAGAGATTACCATGATAGCACTGGCATGCCCCAGATGAATAGTACAAGTTCAGCAGATGAATTTTTC TTGGTCACTGATCCAGCATTTTCGGGTTCACCTCCTAGGAGAGCACCACCTCCTATCCCAGTTTCAGCACCTGTTCCTATAGCAACGGCTGCTCCTGTTT TTGCACCACCGCTAGATGAATCTCTGTCAAGTGTGGCAAAGTCCGAGTCCTTTAATTCTGTGGAAGAACGCGAACTGACTGTGGATGACATTGAGGATTT TGAGGATGATGATCTCGACACAGAGGAATTGGCCAGTGCCAGGGTTGTAAGGCGCAGTCAAAATGATGCTTCTGATCTTGCCCCCAAATTGCCAACTTTT GCAACAGGCATCACTGATGATGACCTCCGTGAAACTGCATATGAAATCCTCTTGGCTTGCGCTGGAGCTTCTGGAGGCCTCATAGTTCCTTCAAAGGAGA AGAAGAAAGACAAGAAGTCCAGCTTGATGAGGAAACTTGGACGCAGTAAAACTCAGAGTCTTGCAAGTCAGTCTGACCGTGCACCTGGAATGGTTGGTTT GTTGGAAACTATGCGTGCTCAGATGGAGATATCTGAGTCAATGGATATCAGAACAAGAAAGGGTCTGCTGAATGCTCTTGCCGGGAAAGTCGGGAAAAGA ATGGATACGCTGTTGATACCGTTGGAACTCTTATGCTGTATTTCCCGCACAGAGTTTTCTGACAAGAAAGCTTATATACGGTGGCAAAAAAGGCAGCTAT TCATGCTCGAAGAGGGCCTTATCAATCATCCAGTCGTGGGATTCGGTGAATCTGGGCGCAAGGGAAGTGAGTTGAGGATTCTTTTGGCAAAAATTGAAGA GTCTGAGTTTCGTGAATCTTCTGCGGGTGAAGTGCAACGAACTGAATGCTTGCGATCTCTCAGAGAGATTGCCACTCAACTTGCTGAGAGACCTGCACGA GGAGACTTAACTGGGGAAGTTTGCCATTGGGCCGATGGTTATCACCTTAACGTTAGATTATATGAGAAGCTCCTCCTCAGTATGTTTGACATTTTAGATG AGGGGAAGCTGACAGAGGAAGTGGAGGAAATACTTGAGCTCTTTAAGTCAACATGGCGTGTGTTGGGAATTACAGAGACCATACACTATGCTTGCTATAC CTGGGTTTTATTCCGTCAGTTCGTCATCACTCGAGAGCTCGGAGTCCTGCACCATGCCATTGAGCAGCTTAACAGAATACCATTGAGGGAACAACGGGGT CCACAGGAGAGGTTACATTTGAAAAGTTTAAGTTCCAGAGCTGATGGGGAAGAGTTATCCTTCTTGCAGTCATTTTTGTCACCCATTCAGAAGTGGGCAG ATAAGCGGCTAGGGGACTACCATCTGCACTTCACTGAGGATCCAGCGTTAATGGAGGGTATTCTTCAAGTTGCAATTGTTACTCGGAGGCTTCTAGTTGA AGAGTCTGAAACTGGTACACTTTCTAAGTCTGCCATGGATAGAGATCAGATTGAATCATACATATCATCATCCATTAAGATGGCATTTACAAGGACACTG CAGATTGTTGACCGGTCAGACGATCATTCTCTAGCGTTACTTGCAGAAGAGACCAAAAAACTTTTAAAAAAGGAAGCAAGTATATTCACACCAATTTTAT CTCAGAGACATCCTCAAGCACTTGTTATCTCAGCATCACTTCTTCACAGGCTTTATGGGATCAAGTTGAAACCATTCCTCGATGGTGCTGAGCATCTGAC GGAAGATGTCGTTTCTGTGTTTCCTGTTGCTGATAGTCTCGAGCAATTTATAATGTCACTCATTTCTACTGCCTGTGGAGATGGCACTGCGGAAGTCAAT TTGAAGAAATTAAATTCATATCAGGTGGAATCTGTGTCTGGAACACTGGTGATGAGATGGGTCAATTCTCAGCTTGGAAGACTTCTAGGATGGGTTGATC GTGCCTTGCAACAAGAGCGATGGGAACCAATATCCCCCCAACAACGGCATGGAAGTTCAATTGTTGAAGTATACAGGATCGTGGAAGAGACAGTGGATCA ATTCTTCGCTCTTAAAGTTCCTATGAGGTCATCGGAGCTGAATAGCATGTTTCGAGGTGTAGACAATGCCTTTCAAGTGTATGCCAAACATGTGACTGAC AAGTTGGAGAACAAGGAAGATTTGATTCCACCAGTTCCTGTTCTTACGAGATATCATAAGGAAGCTGGAATAAAGGCTTTTGTGAAAAAGGAGCTATTCG AACATAAGTTGCCTGAAGAGATGACAAAATCACGTGCCATTGATGTCCAGACTACTCCAAGCCTTTGCGTTCAGTTGAATACATTATTTTATGCAATCAG CCAGCTGAATAAGCTGGAGGACAGCATATGGAGTCGGTGGACAGCCAAGAAGCCTCGTGAACAGTTTATCAAGAAATCCTTGGAAGAGAAGTCTCTAAGT TTAAAGCAAAAGGGTTCATTTGATGGCAGTAGGAAAGACATAAATGCTGCAATTGATCGCATATGCGCGTTTACTGGTACTAAAATCATCTTCTGGGACT TGAGGGAGCCCTTCATTGAGAACTTATACAAACCATCGGTTACACAAAACAGGCTGGAAGATCTCATTGAGCCACTTGATGTAGAACTAAGCCAATTATG CAGCATCATTTCGGACCAACTCAGGGATCGTATAGTAACAAGTCTCCTACAAGCTTCTCTGGATGGCTTGCTCCGTGTCCTGTTAGATGGAGGATCGTCG CGAGTTTTTGCCCACACCGATGCAAAATTTCTAGAAGAAGATCTAGAGATCTTAAAGGAATTCTTCATTTCTGGAGGAGACGGGCTTCCGAGAGGAGTAG TAGAAAACCACGTTGCGCGCGTTAGGCAGGTGATCAAGCTACACGGTTATGAGACGCGTGAGCTAATCGATGACCTGAGATCGTCGAGCGCCATGGAAAG GCACGGTGGTGGTGGGAGCAAGCTCGGCGGGGATACGCAGACATTGCTGAGGATACTGTGCCATCGTGCAGAGCCAGAGGCGTCCCAGTTCTTGAAGAAA CAGTTCAAAATACCCAAGGCGTCAACTTAG
AA sequence Show only first row Show all	>Lus10026160 pacid=23173267 polypeptide=Lus10026160 locus=Lus10026160.g ID=Lus10026160.BGIv1.0 annot-version=v1.0 MEMWVWNVISENAVELLQRYRRDRRILMDFILSGSLIKKVVMPPGAVTLDDVDLDQVSVDYVLNCAKKGGMLELSEAIRDYHDSTGMPQMNSTSSADEFF LVTDPAFSGSPPRRAPPPIPVSAPVPIATAAPVFAPPLDESLSSVAKSESFNSVEERELTVDDIEDFEDDDLDTEELASARVVRRSQNDASDLAPKLPTF ATGITDDDLRETAYEILLACAGASGGLIVPSKEKKKDKKSSLMRKLGRSKTQSLASQSDRAPGMVGLLETMRAQMEISESMDIRTRKGLLNALAGKVGKR MDTLLIPLELLCCISRTEFSDKKAYIRWQKRQLFMLEEGLINHPVVGFGESGRKGSELRILLAKIEESEFRESSAGEVQRTECLRSLREIATQLAERPAR GDLTGEVCHWADGYHLNVRLYEKLLLSMFDILDEGKLTEEVEEILELFKSTWRVLGITETIHYACYTWVLFRQFVITRELGVLHHAIEQLNRIPLREQRG PQERLHLKSLSSRADGEELSFLQSFLSPIQKWADKRLGDYHLHFTEDPALMEGILQVAIVTRRLLVEESETGTLSKSAMDRDQIESYISSSIKMAFTRTL QIVDRSDDHSLALLAEETKKLLKKEASIFTPILSQRHPQALVISASLLHRLYGIKLKPFLDGAEHLTEDVVSVFPVADSLEQFIMSLISTACGDGTAEVN LKKLNSYQVESVSGTLVMRWVNSQLGRLLGWVDRALQQERWEPISPQQRHGSSIVEVYRIVEETVDQFFALKVPMRSSELNSMFRGVDNAFQVYAKHVTD KLENKEDLIPPVPVLTRYHKEAGIKAFVKKELFEHKLPEEMTKSRAIDVQTTPSLCVQLNTLFYAISQLNKLEDSIWSRWTAKKPREQFIKKSLEEKSLS LKQKGSFDGSRKDINAAIDRICAFTGTKIIFWDLREPFIENLYKPSVTQNRLEDLIEPLDVELSQLCSIISDQLRDRIVTSLLQASLDGLLRVLLDGGSS RVFAHTDAKFLEEDLEILKEFFISGGDGLPRGVVENHVARVRQVIKLHGYETRELIDDLRSSSAMERHGGGGSKLGGDTQTLLRILCHRAEPEASQFLKK QFKIPKAST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	1.7	0.9225
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	3.0	0.9078
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	3.5	0.9156
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	3.5	0.9101
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	3.9	0.9169
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	5.5	0.9202
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	8.4	0.9139
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	8.5	0.9023
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	8.5	0.9095
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	8.7	0.8762

Compare expression of checked genes

Lus10026160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.