Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38730 346 / 5e-123 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G62030 204 / 3e-66 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT2G21130 200 / 7e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 200 / 1e-65 ROC2 rotamase cyclophilin 2 (.1.2) AT2G16600 197 / 7e-65 ROC3 rotamase CYP 3 (.1.2) AT4G38740 191 / 2e-62 ROC1 rotamase CYP 1 (.1) AT4G34870 187 / 8e-61 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G55920 187 / 6e-60 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 186 / 3e-59 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 183 / 7e-59 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008662 [exp] 409 / 7e-148 AT2G38730 342 / 2e-121 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007579 [exp] 209 / 1e-69 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 207 / 1e-68 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10017258 [exp] 199 / 2e-65 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10022012 [exp] 196 / 5e-64 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 195 / 1e-63 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10013552 [exp] 192 / 7e-63 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2) Lus10011330 [exp] 191 / 5e-61 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10018238 [exp] 188 / 1e-60 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030000 [exp] 357 / 2e-127 AT2G38730 348 / 5e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G194500 [exp] 356 / 4e-127 AT2G38730 349 / 2e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G130100 [exp] 211 / 4e-70 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 208 / 5e-69 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 207 / 1e-68 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 205 / 6e-68 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G185200 [exp] 201 / 8e-65 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.019G014396 [exp] 196 / 4e-64 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.010G189000 [exp] 186 / 1e-59 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 186 / 1e-59 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10026161 pacid=23173125 polypeptide=Lus10026161 locus=Lus10026161.g ID=Lus10026161.BGIv1.0 annot-version=v1.0 ATGGCTGTAGTAACGGCCAACGCTGAAATATCAGCTCCTGCTACCGGTCCTCCCGCCGGAAATGTCGAGTGGCACGTCAGGCCTCCCAACCCTAAGAACC CCATCGTCTTCTTCGATATCACTATCGGTACTATACCAGCTGGTCGCATCAAGATGGAGCTTTTTGCTGATATCGTTCCCAAAACCGCCGAAAATTTCAG GCAGCTCTGCACCGGCGAGTTCAGGAAAGCTGGATTGCCTGTTGGGTACAAGGGATGCCAATTCCATAGGGTTATCAAGGATTTTATGATTCAAGCTGGT GATTTTGTCAAGGGTGATGGTAGTGGATGTACTTCCATCTATGGGCACCAATTTGATGATGAAAATTTTGTTGCCAAGCATACTGGTCCTGGTCTGCTAT CGATGGCTAACAGCGGGCCTGGTACAAATGGATGCCAGTTCTTCCTCACCTGTGCTAAATGTGACTGGCTCGACAACAAGCACGTTGTCTTTGGGAGGGT CCTTGGAGATGGCCTTTTAGTGGTGCGAAAGATAGAGAATGTAGCAACCGGACCGAACAATCGACCGAAGCTGGCATGCGTTATTGCAGAATGCGGGGAA ATGTAG
AA sequence Show only first row Show all	>Lus10026161 pacid=23173125 polypeptide=Lus10026161 locus=Lus10026161.g ID=Lus10026161.BGIv1.0 annot-version=v1.0 MAVVTANAEISAPATGPPAGNVEWHVRPPNPKNPIVFFDITIGTIPAGRIKMELFADIVPKTAENFRQLCTGEFRKAGLPVGYKGCQFHRVIKDFMIQAG DFVKGDGSGCTSIYGHQFDDENFVAKHTGPGLLSMANSGPGTNGCQFFLTCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGE M

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	2.0	0.9413
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	3.3	0.9421
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	6.0	0.9343
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	6.9	0.9362
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	7.7	0.9266
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	8.0	0.9136
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	9.2	0.9320
AT1G19990			unknown protein		Lus10033141 [exp]	9.5	0.9175
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	9.9	0.9164
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10039009 [exp]	10.4	0.9119

Compare expression of checked genes

Lus10026161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.