Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34750 523 / 1e-179 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT1G30590 459 / 7e-155 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT2G39240 386 / 5e-127 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005701 [exp] 706 / 0 AT2G34750 360 / 1e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10005693 [exp] 650 / 0 AT2G34750 358 / 2e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10018154 [exp] 119 / 1e-29 AT1G30590 98 / 1e-22 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098500 [exp] 626 / 0 AT2G34750 524 / 5e-180 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Potri.007G065101 [exp] 103 / 4e-25 AT2G34750 59 / 4e-10 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05327 [flax] [poplar] RRN3 RNA polymerase I specific transcription initiation factor RRN3
Representative CDS sequence Show only first row Show all	>Lus10026162 pacid=23173164 polypeptide=Lus10026162 locus=Lus10026162.g ID=Lus10026162.BGIv1.0 annot-version=v1.0 ATGGGTGTGGAACCAGTCCCCAACTACATGGAAGAAGATGTCAGCATCACCGATTCTCAGCTGGTTTATCGCTTCAGGCTCGCCCTTAGGTCCAAGTCGG TCCCGTCGGGTGATACTGATGGTTACAAGGAGATTGTAAGTGTCATGGACCCCGGGGAGTACCTGGATGTTGAGCAAGCAGCATACCTTTCAACTGCTAT GAAGGCGCTATCTGGGGCAGTTTCCGATCTTGACGGTGATCATCATGACCAGCTACTAAAAGCTATATTCAAAATGTCGCTGTGGAAATTCCGGCCCAAT GTGATGGATGCATTGCTTGAACTAATTATATCCCTGGCTGCTTCGAATGGAAAATTCGTGGATTCATGCTTGGATATGCTTATAAACAATTTCACACCTC CAAACAAAATATTAGACAAGCTAACAGAACCAGTTGGTCTGGAGAGAAAGGGGAGAGTTCTTCCCAGGATCCATGCAGCTCTGAAGGATCTCACTGAGTT GGTTCCCATAGCAGCAGATCGGATATCGTCGATTCTCTTGGAACACATGCCTTGGAATCCTAAACAAAAGTATGACCAATTAACTATGAAGCGTCAACTT ATCTTTGTCGAGAACATACTCAAGTTGGAGCGTGGTGCCATCAGGGAGTTTGTTGGGAATAGTGTGCTTAGGCACTTGATGATCATGCTGAGAGACGTGG ATGTATCTATTGGTTGGGATGATATTTTACACGATGACTCTTCGAAAGGCATATTCTCGATGGAGCTAGAAGATGAGAGCTATGACGATGTTGATGTTGA AAATGACGAGCTTCCAAGCACTCTAAGTCAGAAGAGTTTGTCGAACAATGAAATGGCTGAAATGCTAGATAGTTTAATGGTGCAAACATTTGAGCACCTG GACTCTGCTGTTGCTGACAAACGTTTATTTGAGGTCTTCGATATGCTATTAAGTTCTTTCAAGGACACGGTATTGACCACTTACAAGTCTAAGTTTTCCC AGTTTGTAATGTTCTATGCCTGTGCCCTGGATCCTGAAAACTGTGGGCTGAAATTTGCGAATGAGCTTATGGATATGTTCGTTTATGATGTTAACCCTCT TGTAAGGATGAGTGCAGTGGCATACCTGGCTAGCTTCCTAGCTCGCGCAAAGTTTCTTCCTCCTGATTTTGTTGCCGTCTTTCTTGAAAGGCTCGTGGAT TGGTGTTTTCAATATTGCACGAACCATGACAGTGACATGAACTCCATACTCCATAAAGTCTTCTATTCTGGATGCCAGGCAATTATGTACGTGCTGTGCT TTCGTATGCAATCAATCGTAGGAATTCCTAAGCTCAGATCTCAGCTATTCTGCATGCCTCTGGACAGAATCTTCAAACATAGACTTGATCCGCTTAGGGT ATGTTTGCCATCAATTGTCCAAGAGTTCCTTAAACAGTCCAAAGCCGCTCACCTTTTCACGTCGTCGAAAACCTTTGTTTTTGAGGACTTGTTGGGTTCG GACCTATCGAAGAGCTTTGGCGGGTTACAGAGGCTCGACATGTTCTTTCCATTCGACCCGTGCATGCTGAAAAAATCCGACAGAAACTTCTTACGGCCAT TCTATGTGTACTGGAAGTACGTCAAAACTACTTACGACGAGGACACTGACCTCGACGAGGATGATGATGAAGAAGGTTGCAGCGACGATGAAAAGGCGGT AGATGATGATTACGAGGTCTCGTACATGGAAGAAGGGATGGCTAGGAGCATGGGGGACGATCTGGATATGGCCGACAATGCTTTGAGCAAGATGTCCATC ACCCCTAGTAATAGCAGCAGCTTGAAGCAGAGGTTTGGAGCCGAAGGATTGCAAATGCCATCGAGAATAAGGCCCTCCATGAGTCCCGAATCGTTGTAA
AA sequence Show only first row Show all	>Lus10026162 pacid=23173164 polypeptide=Lus10026162 locus=Lus10026162.g ID=Lus10026162.BGIv1.0 annot-version=v1.0 MGVEPVPNYMEEDVSITDSQLVYRFRLALRSKSVPSGDTDGYKEIVSVMDPGEYLDVEQAAYLSTAMKALSGAVSDLDGDHHDQLLKAIFKMSLWKFRPN VMDALLELIISLAASNGKFVDSCLDMLINNFTPPNKILDKLTEPVGLERKGRVLPRIHAALKDLTELVPIAADRISSILLEHMPWNPKQKYDQLTMKRQL IFVENILKLERGAIREFVGNSVLRHLMIMLRDVDVSIGWDDILHDDSSKGIFSMELEDESYDDVDVENDELPSTLSQKSLSNNEMAEMLDSLMVQTFEHL DSAVADKRLFEVFDMLLSSFKDTVLTTYKSKFSQFVMFYACALDPENCGLKFANELMDMFVYDVNPLVRMSAVAYLASFLARAKFLPPDFVAVFLERLVD WCFQYCTNHDSDMNSILHKVFYSGCQAIMYVLCFRMQSIVGIPKLRSQLFCMPLDRIFKHRLDPLRVCLPSIVQEFLKQSKAAHLFTSSKTFVFEDLLGS DLSKSFGGLQRLDMFFPFDPCMLKKSDRNFLRPFYVYWKYVKTTYDEDTDLDEDDDEEGCSDDEKAVDDDYEVSYMEEGMARSMGDDLDMADNALSKMSI TPSNSSSLKQRFGAEGLQMPSRIRPSMSPESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34750			RNA polymerase I specific tran...		Lus10026162 [exp]	0	1
AT5G30490			unknown protein		Lus10017101 [exp]	4.7	0.8279
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	7.8	0.8482
AT3G62940			Cysteine proteinases superfami...		Lus10040897 [exp]	23.2	0.8191
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	23.5	0.8269
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	23.7	0.8078
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	33.0	0.8004
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	43.9	0.7733
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10007820 [exp]	55.5	0.7768
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	62.3	0.7905
AT3G04310			unknown protein		Lus10003583 [exp]	81.3	0.7695

Compare expression of checked genes

Lus10026162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.