Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12260 200 / 2e-67 LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008661 [exp] 158 / 1e-49 AT3G12260 108 / 8e-30 LYR family of Fe/S cluster biogenesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029900 [exp] 192 / 2e-64 AT3G12260 177 / 2e-58 LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026163 pacid=23173091 polypeptide=Lus10026163 locus=Lus10026163.g ID=Lus10026163.BGIv1.0 annot-version=v1.0 ATGGAGAGGGCCGCAGCAGCATCGTTGAAGTTCGTGAAAGTACCGCCGAACTCCGCGAGCATGGAGGAGGCGAGGGCTAGGGTTTTCGAATTCTTCAAAA CTGCCTGCAGATCCGTCCCCACGATCATGGACATCTACAATCTCCAGGACGTCGTCAAGGAGTCTCAGCTCCGTTCCTCCGTCGCTTCCGAGATCCGCAG GCACGCTCACATCACCGACCCCAAGGTGATTGATATGCTGCTGCTGAAAGGGACAGAAGAGTTGAGCAACGTTGTGCAGCACTCGAAGCAGCGGCACCAC ATCATCGGACAGTACGTAGTGGGGAAACAAGGACTCGTGCAGGATTTGGGAACCAAGGATGAAGGAGCCTCCGATTTTCTCAAGAACTTCTACAAAACCA ACTACTTCTGA
AA sequence Show only first row Show all	>Lus10026163 pacid=23173091 polypeptide=Lus10026163 locus=Lus10026163.g ID=Lus10026163.BGIv1.0 annot-version=v1.0 MERAAAASLKFVKVPPNSASMEEARARVFEFFKTACRSVPTIMDIYNLQDVVKESQLRSSVASEIRRHAHITDPKVIDMLLLKGTEELSNVVQHSKQRHH IIGQYVVGKQGLVQDLGTKDEGASDFLKNFYKTNYF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12260			LYR family of Fe/S cluster bio...		Lus10026163 [exp]	0	1
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	3.2	0.9123
AT4G30010			unknown protein		Lus10025458 [exp]	6.6	0.8785
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	7.5	0.8994
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	12.1	0.9013
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	14.1	0.8860
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	15.8	0.8821
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	17.5	0.8837
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	17.5	0.8893
AT4G30010			unknown protein		Lus10001443 [exp]	18.7	0.8762
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	21.6	0.8729

Compare expression of checked genes

Lus10026163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.