Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12600 209 / 7e-70 ATNUDT16 nudix hydrolase homolog 16 (.1.2) AT3G26690 139 / 7e-42 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 134 / 5e-40 ATNUDT12 nudix hydrolase homolog 12 (.1) AT1G18300 116 / 1e-32 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G14860 115 / 1e-32 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 114 / 2e-32 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G73540 105 / 1e-28 ATNUDT21 nudix hydrolase homolog 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008660 [exp] 318 / 4e-112 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 239 / 8e-82 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2) Lus10001598 [exp] 114 / 3e-32 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10034598 [exp] 112 / 2e-31 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 110 / 7e-31 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 92 / 1e-23 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194900 [exp] 244 / 8e-84 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 239 / 7e-82 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.016G036700 [exp] 148 / 2e-46 AT3G12600 159 / 8e-51 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 143 / 5e-44 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 142 / 6e-43 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1) Potri.012G044300 [exp] 131 / 1e-38 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.015G035000 [exp] 131 / 3e-38 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.004G085600 [exp] 122 / 2e-35 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.017G131000 [exp] 120 / 1e-34 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.010G107300 [exp] 112 / 1e-31 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10026164 pacid=23173206 polypeptide=Lus10026164 locus=Lus10026164.g ID=Lus10026164.BGIv1.0 annot-version=v1.0 ATGTCTGAGCTGGTTGCCCGTACTGGTCGACATCAGCAACGCTATGAGGGCGGATGTCGCCTTATTGCTGGGTGTATTCCATTTAGGTATAGAGAATGTG ACGAGAATGAAGATAATAACTCCGAGAAGGTTGTTGAGGTTCTTATGATCAACTCCACCAGTGGGCCTGGTCTGCTATTCCCAAAGGGTGGGTGGGAGAA TGACGAAACGGTGAAAGAGGCTGCCGTAAGGGAAGCTGTAGAAGAGGCTGGAGTTCGAGGTGATCTTTTGGATTATATAGGTGATTATGACTTTAAAAGT AAAACCCTGCAAGATGAGAGTTGCCCGGAAGGGCTGTGTAAAGCTGCAATGTTTGCATTGCTTGTGAAAGAAGAGCTCGAGTCATGGCCAGAGCAAAACA CTAGGACAAGGAGCTGGCTAGTCATTTCTGAAGCAGTTGAGAGTTGCCGCCATAAATGGATGGAAGATGCTCTGAAGCATTTTGCTATATTGGTTCAAGA GAAAGGCTTTGGTGATGAATTGGCTTGA
AA sequence Show only first row Show all	>Lus10026164 pacid=23173206 polypeptide=Lus10026164 locus=Lus10026164.g ID=Lus10026164.BGIv1.0 annot-version=v1.0 MSELVARTGRHQQRYEGGCRLIAGCIPFRYRECDENEDNNSEKVVEVLMINSTSGPGLLFPKGGWENDETVKEAAVREAVEEAGVRGDLLDYIGDYDFKS KTLQDESCPEGLCKAAMFALLVKEELESWPEQNTRTRSWLVISEAVESCRHKWMEDALKHFAILVQEKGFGDELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10026164 [exp]	0	1
AT3G06890			unknown protein		Lus10037501 [exp]	15.9	0.7454
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10035148 [exp]	27.1	0.6692
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	41.3	0.6735
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036548 [exp]	43.9	0.6420
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10016489 [exp]	82.6	0.5768
AT2G41150			unknown protein		Lus10018111 [exp]	110.7	0.6252
AT5G21050			unknown protein		Lus10019547 [exp]	174.8	0.6066
AT3G61660			unknown protein		Lus10005152 [exp]	180.0	0.5888
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	251.5	0.5610

Compare expression of checked genes

Lus10026164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.