Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12250 452 / 7e-161 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 448 / 4e-159 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 424 / 1e-149 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 372 / 3e-127 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G08320 337 / 6e-115 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 332 / 5e-112 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 311 / 9e-105 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 306 / 1e-103 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G22070 305 / 3e-102 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G77920 296 / 1e-98 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008658 [exp] 568 / 0 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 527 / 0 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10041475 [exp] 365 / 6e-124 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10004876 [exp] 351 / 6e-118 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 346 / 5e-116 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10034296 [exp] 343 / 1e-115 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10023822 [exp] 341 / 1e-114 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 324 / 9e-109 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 318 / 5e-106 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194600 [exp] 516 / 0 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 509 / 0 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 477 / 1e-168 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 474 / 2e-167 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 418 / 1e-145 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 363 / 3e-123 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 348 / 3e-117 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 345 / 2e-116 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 342 / 5e-115 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 316 / 2e-106 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10026166 pacid=23173191 polypeptide=Lus10026166 locus=Lus10026166.g ID=Lus10026166.BGIv1.0 annot-version=v1.0 ATGACTGATGCCAGTGCTAGGACAGACTCGGGAGATGAATCAGACGAGAAAAGTCAGAGGATTGATAGAGGTATATCAGCATATGTGGGTGCTTCTGATT CCAGTGACAGATCGAAAGATAAAATGGATCAAAAGACATTGCGTAGACTTGCTCAAAATAGAGAAGCTGCAAGAAAAAGCCGGCTTAGGAAGAAAGCATA TGTACAACAGCTAGAGAGTAGCCGGTTGAAGTTGACATCACTAGAGCAGGAGCTTCAACGAGCCCGTCAACAGGGGATCTTTATTTCAAGCTCAGGAGAC CAAACTCATTCAATGGGCGGAAACAGTGCCATGGCATTCGATGTAGAGTACGCAAGATGGGTAGAAGAGCAAAACCGACAAATAAACGAGTTACGAGCAG CAGTAAACTCTCATGCAGGAGATACAGAACTTCGCATCATCATCGATGGTGTAATGACTCACTATGATGAAGTTTTTAGGCTGAAGAGCAATGCTGCCAA GGCTGATGTTTTCCATTTGCTATCCGGCATGTGGAAGACGCCTGCCGAGAGGTGTTTCTTGTGGCTTGGCGGCTTCCGTTCATCCGAACTTCTCAAGCTT TTGATGAATCAGTTGGAGCCTTTGACTGAGCAGCAGTTGGCAGGCATTACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCACTCTCTCAAGGAA TGGAGGCCTTGCAGCAATCGTTGGCTGAAACGTTGTCCAGTGGTTCTCCGGGAACCACCGGTCCATCTGGAAATGTGGCGAACTACATGGGTCAGATGGC CATGGCTATGGGAAAGCTTGGCACCCTCGAGGGGTTCATTCGCCAGGCTGACAATTTGAGACAACAGACGCTACAGCAGATGCACAGAATACTAACTACC CGGCAGTCGGCCAGGGCGTTGCTGGTGATCCATGATTACTTCTCTCGATTACGAGCTCTTAGTTCGCTTTGGCTTGCCAGACCAAGAGAGTGA
AA sequence Show only first row Show all	>Lus10026166 pacid=23173191 polypeptide=Lus10026166 locus=Lus10026166.g ID=Lus10026166.BGIv1.0 annot-version=v1.0 MTDASARTDSGDESDEKSQRIDRGISAYVGASDSSDRSKDKMDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTSLEQELQRARQQGIFISSSGD QTHSMGGNSAMAFDVEYARWVEEQNRQINELRAAVNSHAGDTELRIIIDGVMTHYDEVFRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKL LMNQLEPLTEQQLAGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSPGTTGPSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTT RQSARALLVIHDYFSRLRALSSLWLARPRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	0	1
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	2.4	0.9424
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	2.8	0.9452
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	3.2	0.9383
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	3.7	0.9373
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	4.2	0.9382
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	4.9	0.9384
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	5.1	0.9445
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	6.3	0.9107
AT5G55860			Plant protein of unknown funct...		Lus10016626 [exp]	6.9	0.9348
					Lus10011527 [exp]	8.1	0.9033

Compare expression of checked genes

Lus10026166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.