Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 51 / 3e-08 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21400 42 / 4e-05 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G38830 40 / 0.0001 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23280 40 / 0.0002 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G21410 40 / 0.0002 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT3G21940 40 / 0.0003 Receptor protein kinase-related (.1) AT4G21230 40 / 0.0003 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008656 [exp] 161 / 5e-52 AT4G05200 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026168 [exp] 81 / 1e-19 ND 37 / 0.005 Lus10018380 [exp] 58 / 2e-10 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 51 / 5e-08 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 49 / 3e-07 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10026810 [exp] 47 / 3e-07 AT1G63600 41 / 1e-04 Receptor-like protein kinase-related family protein (.1) Lus10018379 [exp] 46 / 3e-06 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018377 [exp] 45 / 4e-06 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 45 / 6e-06 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 55 / 3e-10 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G026350 [exp] 49 / 2e-07 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 47 / 1e-06 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029300 [exp] 45 / 3e-06 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030300 [exp] 45 / 3e-06 AT4G21410 533 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030212 [exp] 45 / 3e-06 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025200 [exp] 45 / 4e-06 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 45 / 4e-06 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 45 / 4e-06 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.011G029900 [exp] 44 / 4e-06 AT4G05200 112 / 1e-29 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10026169 pacid=23173233 polypeptide=Lus10026169 locus=Lus10026169.g ID=Lus10026169.BGIv1.0 annot-version=v1.0 ATGAAAGCAACAATATTATTATTACTACTATTATCATGTGCAGGAAGCTGGAGTACTACGGTCGTTTTGTGCCAAGATGAATTTCAACCCATAGGAGTTC CACTCTGCAACCTGAAGAAGATACATAAGGGTGACCCGTTCGCCGGCGCACTGGCGGATGCTCTGAAGACGATATGGATCCATGTGGGCGAGCTGGTGGG AGATCCTTCTCACGAACACTGCTACGAAGGTCATGATAAAGACCAGCTTGTTACTGCGTACGGTTCGGCGTCTTGCGCCGAACGCCTTACCGATGAAGAT TGTAGGGATAGCTTGAACGAAGCGTTGGGTCTAATTAGTAATGAATGTGGGAGTACTTACGGGGCTCAAGTCGCCACTCCCACCTGTTCCTTGAGGTTCG AGGCTTACCGTTTCTGCTAG
AA sequence Show only first row Show all	>Lus10026169 pacid=23173233 polypeptide=Lus10026169 locus=Lus10026169.g ID=Lus10026169.BGIv1.0 annot-version=v1.0 MKATILLLLLLSCAGSWSTTVVLCQDEFQPIGVPLCNLKKIHKGDPFAGALADALKTIWIHVGELVGDPSHEHCYEGHDKDQLVTAYGSASCAERLTDED CRDSLNEALGLISNECGSTYGAQVATPTCSLRFEAYRFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	1.7	1.0000
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	2.4	1.0000
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	3.0	1.0000
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	4.0	1.0000
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	4.5	0.9188
AT5G28823			unknown protein		Lus10040056 [exp]	4.9	0.8646
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	5.3	0.8332
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10024331 [exp]	5.7	0.8273
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	6.7	0.8222
					Lus10011438 [exp]	7.1	0.8093

Compare expression of checked genes

Lus10026169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.