Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07030 468 / 4e-164 Eukaryotic aspartyl protease family protein (.1) AT3G54400 453 / 2e-158 Eukaryotic aspartyl protease family protein (.1) AT1G09750 307 / 9e-101 Eukaryotic aspartyl protease family protein (.1) AT1G25510 151 / 5e-41 Eukaryotic aspartyl protease family protein (.1) AT1G01300 147 / 2e-39 Eukaryotic aspartyl protease family protein (.1) AT3G18490 142 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT3G61820 142 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT5G10760 132 / 3e-34 Eukaryotic aspartyl protease family protein (.1) AT3G20015 120 / 6e-30 Eukaryotic aspartyl protease family protein (.1) AT5G10770 117 / 6e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008654 [exp] 667 / 0 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024148 [exp] 417 / 1e-145 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1) Lus10039503 [exp] 413 / 4e-144 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 150 / 1e-40 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 119 / 3e-29 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 117 / 4e-28 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 115 / 8e-28 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 112 / 5e-27 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 110 / 6e-26 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028200 [exp] 521 / 0 AT3G54400 542 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 515 / 0 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 356 / 5e-120 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 148 / 7e-40 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 145 / 9e-39 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 144 / 3e-38 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 143 / 8e-38 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 130 / 5e-33 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 127 / 2e-32 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 122 / 7e-31 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10026171 pacid=23173255 polypeptide=Lus10026171 locus=Lus10026171.g ID=Lus10026171.BGIv1.0 annot-version=v1.0 ATGAAAACCCACAGCTTCCTCTTCCTCTGTTCCTTCTTCCTCTTCTTCATAGCCTCAGCAGTCTCATCCACCCAATCCTCCCCAAAATGTGATGAAGATG CCAAGGGCTCCTCATCAACACTGCGAGTGTTCCACATCTTCAGCCCGTGCTCGCCGTTCCGGCCTGCGAAGCCACTCTCGTGGGAGGAGAGTGTGCTTCA GTTGCAGGCCAAGGACCAGGCTAGGCTTCTGTACCTATCTAGCTTGGTCGCCAAGAAATCCGTCGTCCCGATTGCCTCCGGGAGGCAAGTCATTCAGAGC CCTACATATATCTTGAGGGCTAAGATTGGTACACCACCTCAGACTATGTTGGTGGCTCTTGATACTAGCAATGATGCTGCTTGGATCCCTTGTAATGGCT GTGTTGGATGTTCTTCCTCTGTTTTTGACTCTGCTGCTTCCACTTCCTTCAAGCCTGTCTCCTGCCAAGCCCCTGAATGCAAGCAGGTACCCAACCCTAC TTGCGGCGGAAGCGCGTGCGTATTCAACATGACGTACGGCAGCTCTTCCCTTACCGCCAACCTGTCCTCCGACACCATCACTCTCGCCTCCGATTTCGCT CTTCTCTACACCTTCGGCTGCGTCCAAACGGCGACTGGCAACTCATTCAGCAAGTTCTTCCCCGCCGCAGGGGCTATTGGGCCTGGGCTCGGGCCGGTGG GCCAGCCCAAGAATATCAAGTTCACGCCACTGCTTAAGAATCCGAGGAGGTCGTCTCTGTATTACGTCAATCTGATCGGGATTAGGGTCGGCAAGAAAAT TGTTGACATTCCGGCTAGTTCTTTGGCCTTCGACGCCGCCACCGGCGCCGGCACCATTATTGACTCCGGCACGGTGTTCACCAGGCTAGTGGCACCAGCG TACACAGCGGTGCGTGACGAGTTCCGGAAGCGCGTGGGGAAAAACGCCACCGTGACATCCCTAGGAGGATTCGACACGTGCTACACAACCCCCCTCGTGC CCCCTCCGACGATCACGTTCCTGTTCGCCGGCATGAACGTGACCCTGCCGGCCGACAACATATTGATCCACAGCACCGCCGGGAGCACTTCGTGCCTGGC GATGGCGGCGGCGCCGGACAACGTGAACTCGGTGGTGAACGTGATCGCCAACATGCAGCAGCAGAACCACCGCGTCTTCTTCGACGTGGCGAACTCGAGG GTTGGAGTGTCCCGTGAGCAATGCTCGTGA
AA sequence Show only first row Show all	>Lus10026171 pacid=23173255 polypeptide=Lus10026171 locus=Lus10026171.g ID=Lus10026171.BGIv1.0 annot-version=v1.0 MKTHSFLFLCSFFLFFIASAVSSTQSSPKCDEDAKGSSSTLRVFHIFSPCSPFRPAKPLSWEESVLQLQAKDQARLLYLSSLVAKKSVVPIASGRQVIQS PTYILRAKIGTPPQTMLVALDTSNDAAWIPCNGCVGCSSSVFDSAASTSFKPVSCQAPECKQVPNPTCGGSACVFNMTYGSSSLTANLSSDTITLASDFA LLYTFGCVQTATGNSFSKFFPAAGAIGPGLGPVGQPKNIKFTPLLKNPRRSSLYYVNLIGIRVGKKIVDIPASSLAFDAATGAGTIIDSGTVFTRLVAPA YTAVRDEFRKRVGKNATVTSLGGFDTCYTTPLVPPPTITFLFAGMNVTLPADNILIHSTAGSTSCLAMAAAPDNVNSVVNVIANMQQQNHRVFFDVANSR VGVSREQCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	0	1
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	4.2	0.8467
AT3G09950			unknown protein		Lus10038794 [exp]	5.3	0.8139
AT2G27130			Bifunctional inhibitor/lipid-t...		Lus10026768 [exp]	5.5	0.8330
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	7.5	0.7964
AT1G54200			unknown protein		Lus10026463 [exp]	7.7	0.8088
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	7.7	0.8232
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10022226 [exp]	8.1	0.8010
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	8.9	0.7806
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	9.2	0.7764
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	14.0	0.7002

Compare expression of checked genes

Lus10026171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.