Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27890 238 / 1e-80 NQR NADPH:quinone oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039505 [exp] 263 / 2e-90 AT3G27890 257 / 3e-88 NADPH:quinone oxidoreductase (.1) Lus10039506 [exp] 250 / 4e-85 AT3G27890 247 / 4e-84 NADPH:quinone oxidoreductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028000 [exp] 273 / 3e-94 AT3G27890 306 / 1e-107 NADPH:quinone oxidoreductase (.1) Potri.003G195700 [exp] 265 / 4e-91 AT3G27890 296 / 1e-103 NADPH:quinone oxidoreductase (.1) Potri.003G195900 [exp] 227 / 3e-76 AT3G27890 258 / 3e-88 NADPH:quinone oxidoreductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10026172 pacid=23173245 polypeptide=Lus10026172 locus=Lus10026172.g ID=Lus10026172.BGIv1.0 annot-version=v1.0 ATGGAGGCGGTAGCAGTCCCGGTGATCAGAATCGCTGCTATTTGTGGATCCCTTCGTCAAGGATCGTTCAACCGTGGCCTTCTTCATTCTGCGGTGGAAT TAAGCAAGCAGACTGTGAGCGGCATGGAGATCGAGCACGTCGACATATCTCCGTTACCGATGTTGAACACCGACCTGGAAGGTCCCGGCGGCAGCTTCCC TCAGGCGGTTGACGTTTTCCGGCAGCAAATCCGGGGAGCTGACAGCGTACTCTTTGCCTCTCCCGAGTACAATTACTCCGTCTCCGGGCCGCTGAAGAAT GCAATCGACTGGGGATCGAGAGCTCCGAACTGCTGGGCGGATAAAGCTGCGGCCATTGTGAGCGCCGGTGGAGGATTCGGGGGCGGAAGGGCGCAGTACC ATCTCCGCCAGATAGGGGTTTACCTTGACCTCCACTTCATCAACGAGCCTGAGTTCTTCCTGAATGCATTTGCTCCTCCTGCCAAATTCGACAGCGACGG CAACTTGATTGATGCAGATGCCAAAGAGAGGCTCAAACAGATTCTGCTCAGCCTTCGTAGTCACACTCTTCGGCTCAAGGGCAACTGCTAG
AA sequence Show only first row Show all	>Lus10026172 pacid=23173245 polypeptide=Lus10026172 locus=Lus10026172.g ID=Lus10026172.BGIv1.0 annot-version=v1.0 MEAVAVPVIRIAAICGSLRQGSFNRGLLHSAVELSKQTVSGMEIEHVDISPLPMLNTDLEGPGGSFPQAVDVFRQQIRGADSVLFASPEYNYSVSGPLKN AIDWGSRAPNCWADKAAAIVSAGGGFGGGRAQYHLRQIGVYLDLHFINEPEFFLNAFAPPAKFDSDGNLIDADAKERLKQILLSLRSHTLRLKGNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	0	1
					Lus10018670 [exp]	3.5	0.9000
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	3.9	0.8955
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	4.8	0.8779
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	6.1	0.8720
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	6.5	0.9109
AT5G02640			unknown protein		Lus10038485 [exp]	7.5	0.8942
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	11.2	0.8792
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	13.6	0.9027
AT2G37030			SAUR-like auxin-responsive pro...		Lus10013808 [exp]	20.8	0.8952
					Lus10004450 [exp]	23.5	0.8777

Compare expression of checked genes

Lus10026172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.