Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 406 / 1e-141 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 388 / 3e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 372 / 3e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 362 / 5e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 256 / 9e-83 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 234 / 6e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 228 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 221 / 6e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 216 / 3e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022292 [exp] 414 / 9e-145 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 395 / 6e-137 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015252 [exp] 389 / 1e-134 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011981 [exp] 387 / 7e-134 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 383 / 3e-132 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 376 / 1e-129 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011985 [exp] 363 / 3e-124 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10030995 [exp] 320 / 2e-107 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 310 / 2e-103 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 465 / 7e-165 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 434 / 3e-152 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 419 / 2e-146 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 385 / 6e-133 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 319 / 4e-107 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 281 / 2e-92 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G201000 [exp] 263 / 3e-85 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 261 / 2e-84 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 255 / 5e-82 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121700 [exp] 240 / 2e-76 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10026173 pacid=23156431 polypeptide=Lus10026173 locus=Lus10026173.g ID=Lus10026173.BGIv1.0 annot-version=v1.0 ATGGAAACAACAATAGAGCAGATGATGATGACGAGGAGGCATTCTTCGAAGCTAGGGAGGTCCCTTCTGGTGCCTAGTGTTCAGGAACTGGCAAAATCTT CCACTCTCACCAATTCTGCTAGTGTTCCTCTAAGGTACATAAGGGATCCTGATCACCAGCAGGTTCTGGATAAGCCCTCCTGTAACAAGAGTCCTGAAGA CGAAGATGGCGATGATGATGATGAGGTGCCTGTAATTGACATGGAGAAGCTGCTTTCCCCTGAATCCATGCCTTCTCAACTCTCCAAACTCCATTTTGCC TCCACCCACTGGGGTTTCTTCCAGTTAATAAACCACAGAGTAAGCAGCAGTATTCTGGAGAAGGTGAAGACAGAGGTGGAGCACTTCTTCAACCTACCAA TGGAAGAGAAACAAAAGTATTGGCAAAGAGAGGAAGAAGTCGAAGGTTTCGGACAAGCATTTGTTGTCTCTGAGGAACAGAAGCTCGATTGGGCCGACCT CTTCTTCCTTGTCACGCAGCCTCCTCACGAGCGAAAGCCTCACTTGTTTCCAAAGCTTCCCCTGCCTCTAAGGGAGACCTTGGAGGTATACTCGACAGAG CTTAAAAACACAGCAATGGAGATCTTGGTTCAAATGGCTAAAGCACTAAAAATGGATGAAAATGAGATGACACAAGTGTTTGAAAATGGACATCAATCAA TGAGGATGAACTATTACCCACCGTGCCCGCAGCCTAATAAGGTAATTGGGCTCACTCCGCATTCGGACGCCACAGGCCTAACCATCCTTCTCCAGCTCAA CCAAGTCCAAGGCCTCCAGATCAAGAAACGTGGCAATTGGGTTACTGTGAAACCCCTCCCTGATGCCTTCATCATCAACATTGGTGACATTGTGGAGATT GTGACGAATGGGGCGTATAGAAGCATTGAGCATCGGGCGACAGTGAACTCGGAGAAAGAAAGGCTTTCGATTGCGACTTTCTATGCGCCGAGCTACGAGA AAGAGATAGGACCCGCCGAAAGCTTGATTACTGAGGAGAATCCACCCCACTTCAAACGCATACTCGTGGAAGATTTCTTCAAAGGGCTTTTCTCTAGGGA GCTCAACCGGAAATCTTACCTTGATTCTTTGAGGCTTTAG
AA sequence Show only first row Show all	>Lus10026173 pacid=23156431 polypeptide=Lus10026173 locus=Lus10026173.g ID=Lus10026173.BGIv1.0 annot-version=v1.0 METTIEQMMMTRRHSSKLGRSLLVPSVQELAKSSTLTNSASVPLRYIRDPDHQQVLDKPSCNKSPEDEDGDDDDEVPVIDMEKLLSPESMPSQLSKLHFA STHWGFFQLINHRVSSSILEKVKTEVEHFFNLPMEEKQKYWQREEEVEGFGQAFVVSEEQKLDWADLFFLVTQPPHERKPHLFPKLPLPLRETLEVYSTE LKNTAMEILVQMAKALKMDENEMTQVFENGHQSMRMNYYPPCPQPNKVIGLTPHSDATGLTILLQLNQVQGLQIKKRGNWVTVKPLPDAFIINIGDIVEI VTNGAYRSIEHRATVNSEKERLSIATFYAPSYEKEIGPAESLITEENPPHFKRILVEDFFKGLFSRELNRKSYLDSLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	0	1
					Lus10023495 [exp]	1.4	0.9487
AT5G23160			unknown protein		Lus10010194 [exp]	1.7	0.9565
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	7.7	0.9416
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	8.4	0.9268
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	11.4	0.9421
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10012223 [exp]	12.3	0.9180
AT4G37530			Peroxidase superfamily protein...		Lus10011079 [exp]	12.5	0.8801
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	13.7	0.9303
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	14.9	0.9342
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	16.0	0.9350

Compare expression of checked genes

Lus10026173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.