Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53520 251 / 6e-81 Chalcone-flavanone isomerase family protein (.1) AT5G55160 60 / 4e-11 ATSUMO2, SUMO2, SUM2 small ubiquitin-like modifier 2 (.1.2) AT5G55170 58 / 2e-10 ATSUMO3, SUMO3, SUM3 small ubiquitin-like modifier 3 (.1) AT4G26840 56 / 8e-10 ATSUMO1, SUMO1, SUM1 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) AT2G32765 52 / 3e-08 ATSUMO5, SUM5 SUMO 5, small ubiquitinrelated modifier 5 (.1) AT5G55856 45 / 4e-06 Ubiquitin-like superfamily protein (.1) AT1G68185 42 / 0.0004 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043185 [exp] 63 / 3e-12 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032560 [exp] 63 / 3e-12 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10032561 [exp] 63 / 4e-12 AT5G55160 174 / 4e-58 small ubiquitin-like modifier 2 (.1.2) Lus10012878 [exp] 63 / 6e-11 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2) Lus10030529 [exp] 59 / 6e-10 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G101800 [exp] 261 / 3e-85 AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1) Potri.001G380700 [exp] 216 / 6e-68 AT1G53520 246 / 2e-81 Chalcone-flavanone isomerase family protein (.1) Potri.002G224700 [exp] 63 / 4e-12 AT4G26840 170 / 1e-56 ARABIDOPSIS THALIANA SMALL UBIQUITIN-LIKE MODIFIER 1, small ubiquitin-like modifier 1 (.1) Potri.002G224800 [exp] 62 / 6e-12 AT5G55160 172 / 3e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G158300 [exp] 62 / 6e-12 AT5G55160 171 / 5e-57 small ubiquitin-like modifier 2 (.1.2) Potri.014G190300 [exp] 58 / 2e-10 AT5G55160 168 / 7e-56 small ubiquitin-like modifier 2 (.1.2) Potri.019G057800 [exp] 58 / 1e-09 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF11976 [flax] [poplar] Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10026174 pacid=23156576 polypeptide=Lus10026174 locus=Lus10026174.g ID=Lus10026174.BGIv1.0 annot-version=v1.0 ATGCTTAGCTCAATTACCACTCCGATCTCCTCAAAACCATGGAATTTTGCCCCAGGAGCTTATTTCAGAGGAAAATCTCCCCACCCAGTTGCCCCTCTTC ATAGAATCGCCATCTCTTCTCCCTTATTATCCGCAGCTTTCCCTCTGCATTCCGCTCTCCAGATGAAAACTCCGACTCCAAGAGCTACCCATTTCTCTTT GAAAGCGTCTTCACCATTTTCTTCGGTTGGAACTGCAGAATACTCTGAGGAACCTGCAACTAATGTTAAGTTCCCAACATCCTTGACTATGCCAGGTCAC TCTAGCTCATTATTGCTACTTGGAATTGGATACAGAGAGAAGACTTTTGCAATCATCGGGGTCAAAGTATATGCTGCAGGACTATATGTGGATCAATCTA TCTTTAGTGCATTGGCTGCTTGGAAAGATCAGTCATCTGCTGAGATTGAAGCAAATTCATCTTTGTTTGGTTCCATTTTGCAGGCTCCCTCGGAGAAAAC ACTACGGATTGTTTTGGTAAGAGATGTAGACGGCAAAACGTTCTGGGACGCTTTGGATGGGGCCATTTCACCAAGGATCAAAGCTCCCAGTGAATCTGAT AGGCCAGCTCTCGCGAAGTTCCGAGCCACCTTTGAGAATGGGACTCTCAAGAAAGGAGCTGTCGTATTATTGACATGGTTGGATCCTTGTAAAATGCATG TTTGCGTGGATGGGATGTCATCCGATGTGAGTCCAGGGAAGCATTCAAGTGCAGATGCAACGATTGAATCGGCGAATGTGACTGCTGCCCTTTTTGATGT GTTCTTCGGAGATTCTCCAGTATCTCCTTCCCTGAAAATGTCAGTTGCTACTGGCACGGCAAACCCAGCAGAAGGAGCAAAGAAAAGGTCCAAGAAAACA TTTTCCCCTTTGTTTCTGGAGAAGTTGTGCATAAGGATGTCTAATATGATATCCAATACTAATAATCCATACCACCGCCGTGTGCAAGCTGACGAGGAAG CTGGAGGAAGCGGTGGCAGCAATGCCTCAATCGTGTTGAACATCAAGGGCCAGGATGGAGAATCACTGTGTTTTAAGGTTAAGCACAACGCTCCCGTGAA GATTGTTCTGGAAGAATACTGCAAGAGAAAATTTCTGAATTTGAGAGTTTTGAAGTTCGTCATCGACGGAAAGGACTTTGATTACCGCAAAACCCCTGCC GAGCTTGGGTTGAAGAACAAAGACCTCATTGTTGTGTTGATGTATAATAGTGGAGGCTGA
AA sequence Show only first row Show all	>Lus10026174 pacid=23156576 polypeptide=Lus10026174 locus=Lus10026174.g ID=Lus10026174.BGIv1.0 annot-version=v1.0 MLSSITTPISSKPWNFAPGAYFRGKSPHPVAPLHRIAISSPLLSAAFPLHSALQMKTPTPRATHFSLKASSPFSSVGTAEYSEEPATNVKFPTSLTMPGH SSSLLLLGIGYREKTFAIIGVKVYAAGLYVDQSIFSALAAWKDQSSAEIEANSSLFGSILQAPSEKTLRIVLVRDVDGKTFWDALDGAISPRIKAPSESD RPALAKFRATFENGTLKKGAVVLLTWLDPCKMHVCVDGMSSDVSPGKHSSADATIESANVTAALFDVFFGDSPVSPSLKMSVATGTANPAEGAKKRSKKT FSPLFLEKLCIRMSNMISNTNNPYHRRVQADEEAGGSGGSNASIVLNIKGQDGESLCFKVKHNAPVKIVLEEYCKRKFLNLRVLKFVIDGKDFDYRKTPA ELGLKNKDLIVVLMYNSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	0	1
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	1.0	0.9288
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	2.8	0.9143
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	2.8	0.8986
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	3.5	0.8856
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	5.2	0.8650
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	7.7	0.8646
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	8.3	0.9133
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	8.4	0.8588
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	8.5	0.8481
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	9.8	0.8639

Compare expression of checked genes

Lus10026174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.