Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78520 112 / 6e-32 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G43670 97 / 1e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT3G28250 82 / 4e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09465 76 / 1e-17 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09467 76 / 1e-17 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09464 76 / 1e-17 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G43660 76 / 2e-17 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT4G09090 74 / 1e-16 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G09462 72 / 3e-16 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G63225 72 / 4e-16 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042492 [exp] 191 / 1e-62 AT1G78520 127 / 3e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10005459 [exp] 76 / 4e-16 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 74 / 3e-15 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004962 [exp] 74 / 4e-15 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 73 / 1e-14 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 72 / 1e-14 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 72 / 2e-14 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039923 [exp] 67 / 6e-14 AT4G34480 93 / 5e-25 O-Glycosyl hydrolases family 17 protein (.1) Lus10031443 [exp] 71 / 7e-14 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380600 [exp] 132 / 2e-39 AT1G78520 145 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G099000 [exp] 126 / 2e-37 AT1G78520 133 / 4e-42 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G099600 [exp] 125 / 6e-37 AT1G78520 127 / 6e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G101351 [exp] 124 / 3e-36 AT1G78520 126 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G101451 [exp] 115 / 2e-33 AT1G78520 124 / 2e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G351600 [exp] 91 / 2e-23 AT1G78520 119 / 9e-36 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G240000 [exp] 80 / 3e-17 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G007300 [exp] 80 / 4e-17 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G114500 [exp] 74 / 1e-16 AT1G66870 96 / 1e-26 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.008G056000 [exp] 75 / 1e-15 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family CL0209 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10026175 pacid=23156467 polypeptide=Lus10026175 locus=Lus10026175.g ID=Lus10026175.BGIv1.0 annot-version=v1.0 ATGGGGCCGCCCAACCACTTTCTCTTTATCTTCGCCTTGTACTTTGCTCTAGGTGCAAGCTTCACCATGGGGAACGGACAGAGTGGGAGCAGTAGTAGTA GTTGGTGTGTGGCAAAGCCGTCGTCAGACCAAGCAACGTTGTTAGCAAACATAAACTACGCATGCTCGCAAGTGGATTGCCAGATGCTGAGGAAAGGATG CCCATGTTCGTATCCTGACACGCTCATCAACCACGCCTCCATCGCCATGAATCTTTACTACCAATCCAAAGGAAGAAACCAGTGCAACTGCGATTTCAGA GGCTCTGCTCTTATTACACCGAATAATGGCCCGAGTTGGCCTACCGACCCTAGCCTTAGTTCCTTCATCGCCACTGCATTAAAACTCGCATGGGAAGAAG GAAGTGTTGAAGGAGAGGATGGTGCTGGACGACGAGAAAAGACGGTGACAATAAGCGGTGTGGATGGAGAGGCAATGAAGTTGTACAAAGTGTACATTGT TAAGCTTGTGGTTCAGCCGCCCAATAATAAAGAGGAGCTGGATGGGAGTACTTCCGGCAGCTACGTCATCCTTACTCTCAGCTACGAGAAGCTTAACCCG ACTTCTCCACCGCCATACAAGTACCTTGATTTCCTCGAATCTGTTATTCTGGACATCAGCCATGGTGTCCATTCATAA
AA sequence Show only first row Show all	>Lus10026175 pacid=23156467 polypeptide=Lus10026175 locus=Lus10026175.g ID=Lus10026175.BGIv1.0 annot-version=v1.0 MGPPNHFLFIFALYFALGASFTMGNGQSGSSSSSWCVAKPSSDQATLLANINYACSQVDCQMLRKGCPCSYPDTLINHASIAMNLYYQSKGRNQCNCDFR GSALITPNNGPSWPTDPSLSSFIATALKLAWEEGSVEGEDGAGRREKTVTISGVDGEAMKLYKVYIVKLVVQPPNNKEELDGSTSGSYVILTLSYEKLNP TSPPPYKYLDFLESVILDISHGVHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78520			Carbohydrate-binding X8 domain...		Lus10026175 [exp]	0	1
AT1G78520			Carbohydrate-binding X8 domain...		Lus10042492 [exp]	1.0	0.8364
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	2.0	0.8055
AT2G44040			Dihydrodipicolinate reductase,...		Lus10024047 [exp]	13.7	0.7949
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10011667 [exp]	35.9	0.7251
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10024169 [exp]	36.4	0.7822
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	38.5	0.6681
AT1G32860			Glycosyl hydrolase superfamily...		Lus10008277 [exp]	42.7	0.7837
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	69.2	0.7552
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	73.4	0.7114
AT5G08540			unknown protein		Lus10010158 [exp]	76.4	0.7411

Compare expression of checked genes

Lus10026175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.