Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14690 481 / 4e-167 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14610 465 / 2e-160 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14650 460 / 1e-158 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14680 458 / 6e-158 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14620 458 / 7e-158 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14660 454 / 3e-156 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14640 450 / 1e-154 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14630 444 / 3e-152 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT1G17060 332 / 3e-109 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) AT2G26710 325 / 1e-105 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042487 [exp] 703 / 0 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 690 / 0 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 627 / 0 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10033044 [exp] 299 / 3e-95 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 296 / 1e-94 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 279 / 8e-88 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10010821 [exp] 271 / 7e-85 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10025755 [exp] 277 / 2e-82 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10017771 [exp] 262 / 2e-81 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098800 [exp] 490 / 2e-170 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 490 / 3e-170 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 489 / 7e-170 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 488 / 2e-169 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 486 / 1e-168 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 480 / 2e-166 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101250 [exp] 444 / 2e-152 AT3G14690 568 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G117600 [exp] 369 / 8e-123 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 334 / 3e-109 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 325 / 1e-105 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026177 pacid=23156597 polypeptide=Lus10026177 locus=Lus10026177.g ID=Lus10026177.BGIv1.0 annot-version=v1.0 ATGGCATGTGTACTTGAGCTCCGTGGGAGTAGCTTTGGTGATACTGGGAATAACGACATGGCGTGGAAAGTTCTGAACTGGGTTTGGTTCAAACCCAAGA AGCTGGAAAGGTATCTGAGGAATCAAGGCTTCGACGGCAAGTCGTATAGAGTTTTGAAGGGAGATCTTAAGGAAAATTTTGAGATGAAAAAAGAAGCTAG ATCCAGAAACTTGGACTTCTCCCAGAACCCTGCCTTGCGCGTCATTCCCTTGTGTTACCACACCGTCAATACCTACGGAAAGAAGTCATTTACGTGGTAT GGATCGATCCCGAGGGTTCACGTTATGAATCCTGAAGATATAAAAGAAGTATTGACGAAAACATACCAGTATACAAAGTCTGGAAGAAACCCACTCATCA AAATGTTACCTTCTGGACTTGGAAGCTACGAGCACGACAAATGGGCGGTACATAGAAGAATCATTAACCCTGCTTTCCAACAAGACAAGTTGAAGCTAAT GGTGCCAGTATTCTATGAAAGCTGCAAGGAAACTGTTGACGTTTGGGAAAAGTTCCTTGTTTCCAACAGGGGATCATCTGAAATTGACGTATATCTCCAG AGCATGGCATGTGACATTATTTCGAGAACAGCGTTCGGAAGCAGTTACCAAGAAGGGAAAAGAATCTTCGATCTCCTCAAAGAACAATCCCTTCTTGTGA TGCAGATGTTGCAACAAGTTTATATCCCTGGCTGGAGTTTCTTACCCACAAAACATAACACCAGGATGAAACAAGTTCGCATGGAGATCCAAACATCACT GAGGGGCATCGTTTCGAAGCGTCAGAATGCCTTGCAAATAGGCGAAGTGGTTAACAACACCGACTTACTAGGCGTGATGTTGGAATCCAACTGTACCGGG ACGGATGTTGCCATGACGATAGAGGAAGTCTTTGAGGAATGCAAGCTGTTCTATTTCGCTGGCCAAGAGACGACCTCTGTTCTGCTTGTTTGGACCATGA TCCTCCTGAGCAAGCACCCGAATTGGCAAGAACGCGCAAGACAGGAGGTCTTGCGCGTCTTGGGCGATAATGATGTCCCCCATTATAACGATCTTGACAA CATCAAAATTGTGACTATGATTTTGTACGAGGTTCTGAGGTTGTATTCGCCAGTTGTGGTGTTGATTCGAACCGTCGAGAAAGATTGGAAACTGGAAAAT GTTACTTTGCCTGCTGGGTTTCAGATGGTACTACCCGCTATCCTCATGCACATGGACCCTGAAGTCCGGGGGGATGATGCTAGCGAGTTTAACCCATGGG GCGCTATGATTTGCATTGCACAAAACTTTGCTCTTCTGGAAGCAAAGATCGCTATAGCAATCATATTGAAGAGGTTTTCTCTTGAGCTTTCACCTTCTTA TATTCATGCCCCTTCGACTGGAGCCGTCAGTCTTCGACCAGAATTTGGTGCTTCGCTTATCCATCTAGTTAAATGA
AA sequence Show only first row Show all	>Lus10026177 pacid=23156597 polypeptide=Lus10026177 locus=Lus10026177.g ID=Lus10026177.BGIv1.0 annot-version=v1.0 MACVLELRGSSFGDTGNNDMAWKVLNWVWFKPKKLERYLRNQGFDGKSYRVLKGDLKENFEMKKEARSRNLDFSQNPALRVIPLCYHTVNTYGKKSFTWY GSIPRVHVMNPEDIKEVLTKTYQYTKSGRNPLIKMLPSGLGSYEHDKWAVHRRIINPAFQQDKLKLMVPVFYESCKETVDVWEKFLVSNRGSSEIDVYLQ SMACDIISRTAFGSSYQEGKRIFDLLKEQSLLVMQMLQQVYIPGWSFLPTKHNTRMKQVRMEIQTSLRGIVSKRQNALQIGEVVNNTDLLGVMLESNCTG TDVAMTIEEVFEECKLFYFAGQETTSVLLVWTMILLSKHPNWQERARQEVLRVLGDNDVPHYNDLDNIKIVTMILYEVLRLYSPVVVLIRTVEKDWKLEN VTLPAGFQMVLPAILMHMDPEVRGDDASEFNPWGAMICIAQNFALLEAKIAIAIILKRFSLELSPSYIHAPSTGAVSLRPEFGASLIHLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	0	1
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	1.4	0.9257
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	2.8	0.8979
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	2.8	0.8668
					Lus10004431 [exp]	6.3	0.8525
AT3G02125			unknown protein		Lus10013196 [exp]	7.1	0.8629
					Lus10005955 [exp]	11.0	0.8473
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	11.5	0.8866
					Lus10025503 [exp]	14.5	0.8529
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Lus10019906 [exp]	15.2	0.8344
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	18.7	0.7948

Compare expression of checked genes

Lus10026177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.