Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14690 589 / 0 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14610 579 / 0 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14680 572 / 0 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14630 567 / 0 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14660 566 / 0 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14650 558 / 0 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14640 551 / 0 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14620 543 / 0 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT1G17060 394 / 9e-133 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) AT2G26710 385 / 1e-128 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042487 [exp] 957 / 0 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 776 / 0 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026177 [exp] 706 / 0 AT3G14690 514 / 6e-180 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10033044 [exp] 371 / 7e-123 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 355 / 5e-117 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017771 [exp] 328 / 2e-106 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10010821 [exp] 325 / 3e-105 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 325 / 4e-105 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10026085 [exp] 320 / 2e-103 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098800 [exp] 612 / 0 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 607 / 0 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 604 / 0 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 604 / 0 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 602 / 0 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 597 / 0 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101250 [exp] 559 / 0 AT3G14690 568 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G117600 [exp] 435 / 2e-148 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G099200 [exp] 414 / 2e-142 AT3G14660 466 / 3e-163 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) Potri.018G070900 [exp] 397 / 2e-133 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10026178 pacid=23156537 polypeptide=Lus10026178 locus=Lus10026178.g ID=Lus10026178.BGIv1.0 annot-version=v1.0 ATGCCGATGGGTAGTAATGATGAATGGCAAGTCTTGACCTCGGTGGGAGTAGCTTTACTGATAGTGGGAATAACGACATGGGCGTGGAAAGTTCTCAACT GGGTTTGGTTCAAACCCAAGAAGCTGGAGCGGTACCTGAGGAATCAAGGCTTCCACGGCAGGTCGTACCGTGTATTGAAGGGAGATCTCAAGGAAAATTT TGAGATGAAAAAGGAAGCCAGATCTAGAGAGTTCGACTTCACCCAGGACCCTGCCTTGCGGGTCCTTCCCTTATCTCGTCACATCGTCAACACCTACGGA AAGAAGTCATTTACATGGTTTGGACCGATCCCGAGGGTGCACATTATGAATCCCGAAGATATAAAAGAGGTATTAACAACGACAAATGAGTATACCAAGT CTCAAGGAAACCCACTCATCAAAATGTTAGCTTCTGGACTTGCGAGCTACAACGGCGACAAATGGGCCCAACATAGAAGAATCATCAACCCTGCTTTCCA TCGGGAAAAGTTGAAGCTGATGGTGCCAGTATTCTATGAAAGCTGCAAGGAAACCATTGACGTTTGGGAAAAGTTAGTTGTTTCTAATGGAGGATCATCT GAAATGAACATATGGCCATATCTCCAGAACATGACTTGTGATATCATATCGAGAACAGCGTTCGGAAGCAGTTACAGAGAAGGGAAGAGAATCTTCGATC TCCTCAAAGAACAATCGCTTCTTGTGATGCAGGTAGTGCAACAAGTTTATATCCCTGGCTGGAGGTTTTTACCCACGAAACTTAATAGTAGGATCAAACA TAATCACATGGAGATCCAAACATCACTTAAGGGCATCATATCCAAGCGCGAGACGGCCTTGAAACTTGGCGATCATGTGGTTAACAACACCGACTTACTA GGTGTGATGATGGAATCCAACAGCGAGACCAAAAAAGGTGCCATGACTATAGAGGAAGTGATTGAGGAATGCAAGCTCTTCTATTTCGCCGGCCAGGAGA CAACCTCTGTTCTGCTTGTTTGGACCATGATCCTCCTCAGCAAGTACCCGAATTGGCAAGAACGCGCAAGACAGGAGGTCTTGCGCGTCTTGGGCGATGA TCGTGATGATGTCGACCCTGATTATAGTGATCTCGGCCACCTTAAAATCGTAACTATGATTTTGTACGAGGTTCTGAGATTGTATCCGCCGGTTGTGATG TTAAGACGAGCTGTCGAGAAAGATACGAAACTGGGGGATGTTACTTTGCCTGCTGGGGTACAAATTGTACTACCGGCTATCCTCATTCACAAGGACCAAG AAGTTTGGGGGAAAGATGCTGGCGAGTTTAACCCAGAGAGATTTGCTGGAGGAGTTTCTCAAGCGACGAAAAATCAACAAGTTGCATACTTTCCATTTGG GTGGGGTCCGAGGATTTGCATTGGGCAAAATTTTGCTCTTTTGGAGGCAAAGATGGCTTTAGCAATCATATTGAAGAGGTTTTCCTTTGTACTTTCACCT TCCTATGTTCATGGTCCTTCGACCGAAGCCATCATGCTCCAACCAGAATTTGGTGCTACACTTATCCTTCACAAACTTTAA
AA sequence Show only first row Show all	>Lus10026178 pacid=23156537 polypeptide=Lus10026178 locus=Lus10026178.g ID=Lus10026178.BGIv1.0 annot-version=v1.0 MPMGSNDEWQVLTSVGVALLIVGITTWAWKVLNWVWFKPKKLERYLRNQGFHGRSYRVLKGDLKENFEMKKEARSREFDFTQDPALRVLPLSRHIVNTYG KKSFTWFGPIPRVHIMNPEDIKEVLTTTNEYTKSQGNPLIKMLASGLASYNGDKWAQHRRIINPAFHREKLKLMVPVFYESCKETIDVWEKLVVSNGGSS EMNIWPYLQNMTCDIISRTAFGSSYREGKRIFDLLKEQSLLVMQVVQQVYIPGWRFLPTKLNSRIKHNHMEIQTSLKGIISKRETALKLGDHVVNNTDLL GVMMESNSETKKGAMTIEEVIEECKLFYFAGQETTSVLLVWTMILLSKYPNWQERARQEVLRVLGDDRDDVDPDYSDLGHLKIVTMILYEVLRLYPPVVM LRRAVEKDTKLGDVTLPAGVQIVLPAILIHKDQEVWGKDAGEFNPERFAGGVSQATKNQQVAYFPFGWGPRICIGQNFALLEAKMALAIILKRFSFVLSP SYVHGPSTEAIMLQPEFGATLILHKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	0	1
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	2.0	0.9705
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	2.0	0.9666
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	3.0	0.9576
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	3.2	0.9665
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	3.7	0.9704
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	4.2	0.9685
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	7.0	0.9615
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	7.3	0.9637
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10020883 [exp]	7.7	0.9492
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016470 [exp]	8.7	0.9458

Compare expression of checked genes

Lus10026178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.