Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29970 57 / 2e-09 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT3G14595 55 / 2e-09 Ribosomal protein L18ae family (.1) AT1G53560 53 / 1e-08 Ribosomal protein L18ae family (.1) AT1G17080 51 / 8e-08 Ribosomal protein L18ae family (.1) AT4G26060 50 / 2e-07 Ribosomal protein L18ae family (.1) AT5G57060 49 / 2e-07 unknown protein AT1G54217 47 / 1e-06 Ribosomal protein L18ae family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042485 [exp] 87 / 2e-21 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10026193 [exp] 62 / 1e-11 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10042474 [exp] 61 / 2e-10 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1) Lus10005572 [exp] 55 / 1e-08 AT1G29970 88 / 4e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10013704 [exp] 54 / 1e-08 AT1G29970 89 / 1e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10005580 [exp] 51 / 1e-07 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10013712 [exp] 47 / 2e-06 AT1G17080 186 / 6e-61 Ribosomal protein L18ae family (.1) Lus10011943 [exp] 43 / 0.0001 AT4G26060 150 / 4e-47 Ribosomal protein L18ae family (.1) Lus10027625 [exp] 42 / 0.0001 AT4G26060 147 / 2e-46 Ribosomal protein L18ae family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G380200 [exp] 50 / 1e-07 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1) Potri.003G044400 [exp] 49 / 1e-07 AT5G57060 103 / 3e-30 unknown protein Potri.006G146300 [exp] 49 / 6e-07 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 47 / 1e-06 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1) Potri.001G198700 [exp] 46 / 1e-06 AT4G26060 107 / 3e-31 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026180 pacid=23156485 polypeptide=Lus10026180 locus=Lus10026180.g ID=Lus10026180.BGIv1.0 annot-version=v1.0 ATGGACGCAGAAAAGAAGTACAACATCAGTAACGGAAATCATGGAATTAGTGGACAGAATGATCTGTTGCAGCAGGAGCAGTATTTTCACAGTAGCCACT CGCCGCCGCAACCTCTTCCATCAGCTCCACCACATGATCATCAACATCCGTCTGATCATGATCAACGGATCAACGTTCCAGATGCATATTGTGCATACGC TAACGCTACACCCACCGCATCCAATCCTGCCCCACCCAATTACGTTAAATTGGAGACAGCTTTGCCCACTGTTGTTGTTGATAATGAACATCCACAAGAG CCTACCCACCAACTGCCTTGCTGTGGAATTGGCATTGGCTGGTCCCTGTTCCTGCTAGGATTCATCTTCCCATTTCTATGGATTGGGGGTGGCCTCCTTT GGTGTACCAAGTACGACCTTCGTTTGGTACACCGTCGAGAGAAGCCTGGTTACATTGCTTGCTTTGTTATGCCTCACCGATCGATCTCCTCAACTAATGG GCGAAGAAAACAAGTACAGCACCAGCAATGGAAATGGAAGTACAGCACCAGCAATGGAAATGGAAGTAGTGGACAGAATGATCAGTTGCAGCATCAGCAA TATTGTTACAGCACCCACGCGCCCCCACAATCTCCATCAGCTCCACCACTTGATCAACATCAACAACATCCGTCTGACGATCAACGGATCAACGTCCCAG ATGCATATTGTGCTTACGCTTTACCCGCCGCAGCGTACCCAGCCCCACTGAATTACGCTAAATTGGAAACGCCCGTGCCGGCTGCTGTTGTTGTTGTTGT TGATAATGATGAACATTCAGAAGAGCCTTCTCACCGACCGATGCCTTGCTGTGGAATTGGCATTGGCTGGACCCTGATTCATCTTTCCACTCCTCCATCT TTGGTTGGCTAA
AA sequence Show only first row Show all	>Lus10026180 pacid=23156485 polypeptide=Lus10026180 locus=Lus10026180.g ID=Lus10026180.BGIv1.0 annot-version=v1.0 MDAEKKYNISNGNHGISGQNDLLQQEQYFHSSHSPPQPLPSAPPHDHQHPSDHDQRINVPDAYCAYANATPTASNPAPPNYVKLETALPTVVVDNEHPQE PTHQLPCCGIGIGWSLFLLGFIFPFLWIGGGLLWCTKYDLRLVHRREKPGYIACFVMPHRSISSTNGRRKQVQHQQWKWKYSTSNGNGSSGQNDQLQHQQ YCYSTHAPPQSPSAPPLDQHQQHPSDDQRINVPDAYCAYALPAAAYPAPLNYAKLETPVPAAVVVVVDNDEHSEEPSHRPMPCCGIGIGWTLIHLSTPPS LVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	1.0	0.9869
					Lus10001476 [exp]	1.4	0.9629
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	12.2	0.9545
					Lus10017959 [exp]	12.5	0.9155
					Lus10009411 [exp]	12.8	0.9000
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	13.6	0.8674
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	14.1	0.9531
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	15.8	0.9531
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	15.9	0.8655
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	17.0	0.8864

Compare expression of checked genes

Lus10026180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.