Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17940 499 / 4e-179 Galactose mutarotase-like superfamily protein (.1) AT5G15140 304 / 5e-100 Galactose mutarotase-like superfamily protein (.1) AT3G47800 296 / 8e-99 Galactose mutarotase-like superfamily protein (.1) AT3G01260 176 / 3e-51 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010976 [exp] 457 / 4e-162 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 409 / 8e-144 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 313 / 2e-105 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 275 / 9e-90 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 268 / 2e-87 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 260 / 4e-85 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 242 / 1e-75 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 142 / 8e-42 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 97 / 6e-24 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045875 [exp] 514 / 0 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 457 / 6e-162 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 301 / 1e-100 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 292 / 5e-97 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 291 / 1e-96 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 285 / 2e-94 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 280 / 3e-92 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10026181 pacid=23156518 polypeptide=Lus10026181 locus=Lus10026181.g ID=Lus10026181.BGIv1.0 annot-version=v1.0 ATGGCGAATCCAACCAAAGAACCAGAGCTATTTGAGCTCGACAATGGATACATCAAGGTCAAGATCACCAACTTGGGTTGCACCATTACATCCCTAGAGA TACCTGATAAAAATGGAAATAAAGCTGATGTAGTCCTTGGGTTTGATTCCATCGAGCCATACCAGAAAGGTGCAGCACCATACTTTGGATGCATAGTGGG TCGAGTAGCAAATAGGATCAGGGATGGCAAATTTACCTTAGACGGAGTTGATTACACCCTGCCTCTCAACAGGCCTCCAAACAGTCTCCACGGTGGTAAT AAGGGGTTTGACAAGAAGGTATGGGAGGTTGCTCAACATATCCAAGGCCAGATTCCATCCATAACCTTCAAGTATCACAGTGCTGAAGGAGAAGAAGGGT ACCCAGGGGAGCTTGATGTAACGGCAACTTATTCACTGACATCAAACACAACAATGAGACTAGAAATGGAAGCAGTTCCAAACAAGAAAGCAACTCCAGT CAGCCTAGCACAACACACATACTGGAACTTATCAGGTCACGACTCAGGTACGACCATACTGGACCATTCGATTCAGATATTCGGTTCCCACGTCACTCCA GTCGATCAGCACACTGTCCCAACCGGAGAGATACTCCCCGTAAAAGGCACACCTTTCGATTTCACCATCGAGAAGAAAATCAACATGTCCATCCACGAGG TGCAGGGTCTAGGTTACGACCACAACTACGTGCTGATGATGCAGCAGGATAGTAAGGAGGAGGAGAAGAGCAAGCATCCGGGTTTGAAGCTGGCGTGCAA GCTGAAGAATCCAAGCGGTTCGAGGGGGTTGGCATTGTGGACGGATGCCCCAGGGATGCAGTTCTACACTGGGAATAATGTGAATGGTGTGGTAGGTAAA AGCAGGGCGAATTATGGAAAGTACTCCGGAGTTTGTTTGGAGACTCAGGGGTTTCCTAATGCGGTGAATCAGCCTAATTTTCCTAGTGTGATTGTTCAGC CTGGCCACAAGTACCAACATACCATGGTTTTCGAGTTTTTTTAA
AA sequence Show only first row Show all	>Lus10026181 pacid=23156518 polypeptide=Lus10026181 locus=Lus10026181.g ID=Lus10026181.BGIv1.0 annot-version=v1.0 MANPTKEPELFELDNGYIKVKITNLGCTITSLEIPDKNGNKADVVLGFDSIEPYQKGAAPYFGCIVGRVANRIRDGKFTLDGVDYTLPLNRPPNSLHGGN KGFDKKVWEVAQHIQGQIPSITFKYHSAEGEEGYPGELDVTATYSLTSNTTMRLEMEAVPNKKATPVSLAQHTYWNLSGHDSGTTILDHSIQIFGSHVTP VDQHTVPTGEILPVKGTPFDFTIEKKINMSIHEVQGLGYDHNYVLMMQQDSKEEEKSKHPGLKLACKLKNPSGSRGLALWTDAPGMQFYTGNNVNGVVGK SRANYGKYSGVCLETQGFPNAVNQPNFPSVIVQPGHKYQHTMVFEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17940			Galactose mutarotase-like supe...		Lus10026181 [exp]	0	1
AT1G70260			nodulin MtN21 /EamA-like trans...		Lus10010696 [exp]	2.0	0.7957
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10030707 [exp]	10.7	0.6874
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	17.5	0.7750
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10030494 [exp]	21.5	0.7204
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	28.5	0.7536
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	33.3	0.7475
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	34.8	0.7396
AT1G58360		NAT2, AAP1	NEUTRAL AMINO ACID TRANSPORTER...		Lus10033759 [exp]	36.1	0.7114
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	36.6	0.7472
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	42.8	0.6663

Compare expression of checked genes

Lus10026181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.