Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2) AT4G35335 63 / 7e-11 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042484 [exp] 520 / 0 AT5G65000 341 / 1e-116 Nucleotide-sugar transporter family protein (.1.2) Lus10026562 [exp] 61 / 3e-10 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10013845 [exp] 58 / 3e-09 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020416 [exp] 45 / 6e-05 AT1G28220 341 / 2e-116 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075600 [exp] 452 / 6e-161 AT5G65000 461 / 2e-164 Nucleotide-sugar transporter family protein (.1.2) Potri.007G092800 [exp] 449 / 2e-159 AT5G65000 429 / 6e-152 Nucleotide-sugar transporter family protein (.1.2) Potri.016G113200 [exp] 62 / 2e-10 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10026182 pacid=23156441 polypeptide=Lus10026182 locus=Lus10026182.g ID=Lus10026182.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGAGGGTCAGAGGTCCGAGACCTGATACCAATTCGCAGAATATGAGCTCCGGAGTCTTAATCTGCTGTTTGTTACTCACTCTTCAATATG GAGCTCAACCTCTCATTTCCAAGTATTGCACCAGACCAGAAGTTATTGTGACTACATTGGTCCTGTCATGCGAGATCATTAAGGTTATATGTGCAACAAT TGTCATGGCTACAGATGGAAGCTTGAAGAAATTATCCAAGGAGTGGAATTTGGTCAACTCATTGACAGCATCAGGGCTTCCTGCGGCAATTTATGCACTG CAAAACAGCTTGCTCCAGATTTCTTACAAGAATCTTGATTCGCTAACGTTTACAATACTGAACCAGACAAAGATATTTTTTACTGCCTTGTTCATGTATA TAATATTAAGGCAGAAGCAGTCAACTCCGCAAATTGGGGCATTGTTCTTATTAATCATGGCTGCTGTTCTTCTTAGTGTCGGGGAAGGCTCTAGCAAAAC ATCTACTAGCATTAACCCTGATCAGATTTTGTATGGAATCGTGCCTGTCCTGGTTGCTTCAGTTCTCTCTGGCTTAGCATCAGCATTATGTCAATGGGCT TCTCAGGTTAAGAAACATTCATCATACCTGATGACAATTGAAATGTCTATTTTTGGGAGCATGTGCTTATTAGTCAGCATGACAAAGTCTCCAGATGGCG AGGCGATCAGCAAAAAGGGGTTCTTTTATGGGTGGACTTCGTTAACTTTGTTCCCAGTTCTATTAAACTCCGTTGGAGGAATCCTAGTTGGGGTCGTGAC AAGCAAGGCTGGAGGGGTTAGAAAGGGTTTTGTGATTGTTTCTGCCCTGCTAGTGACAGCATTATTTCAGTTTGTTTACGAGGGGAAATCACCGTCAATT TATTGTCTGGTTGCATTACCACTCGTGCTGTTCAGCATTTCAATTTACCAGATGTATCCATACAAAGATAAAGAGAAGGCCACGTAA
AA sequence Show only first row Show all	>Lus10026182 pacid=23156441 polypeptide=Lus10026182 locus=Lus10026182.g ID=Lus10026182.BGIv1.0 annot-version=v1.0 MAAMRVRGPRPDTNSQNMSSGVLICCLLLTLQYGAQPLISKYCTRPEVIVTTLVLSCEIIKVICATIVMATDGSLKKLSKEWNLVNSLTASGLPAAIYAL QNSLLQISYKNLDSLTFTILNQTKIFFTALFMYIILRQKQSTPQIGALFLLIMAAVLLSVGEGSSKTSTSINPDQILYGIVPVLVASVLSGLASALCQWA SQVKKHSSYLMTIEMSIFGSMCLLVSMTKSPDGEAISKKGFFYGWTSLTLFPVLLNSVGGILVGVVTSKAGGVRKGFVIVSALLVTALFQFVYEGKSPSI YCLVALPLVLFSISIYQMYPYKDKEKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	0	1
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	1.7	0.8044
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	4.0	0.7812
AT1G15860			Domain of unknown function (DU...		Lus10013742 [exp]	6.0	0.7841
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	6.2	0.7934
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	6.9	0.7563
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	7.5	0.7657
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	8.4	0.7708
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	9.5	0.7701
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	11.4	0.7378
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	13.3	0.6569

Compare expression of checked genes

Lus10026182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.