Lus10026184 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78400 310 / 5e-103 Pectin lyase-like superfamily protein (.1)
AT1G43080 305 / 4e-101 Pectin lyase-like superfamily protein (.1)
AT1G43090 305 / 1e-100 Pectin lyase-like superfamily protein (.1)
AT1G43100 301 / 4e-99 Pectin lyase-like superfamily protein (.1)
AT2G40310 298 / 3e-98 Pectin lyase-like superfamily protein (.1)
AT2G15460 298 / 5e-98 Pectin lyase-like superfamily protein (.1)
AT2G33160 305 / 7e-98 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
AT2G15450 295 / 3e-97 Pectin lyase-like superfamily protein (.1)
AT4G13760 295 / 6e-97 Pectin lyase-like superfamily protein (.1)
AT2G15470 294 / 9e-97 Pectin lyase-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026183 641 / 0 AT2G33160 305 / 2e-100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Lus10042483 632 / 0 AT2G33160 298 / 6e-98 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Lus10043088 262 / 2e-84 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1)
Lus10041058 261 / 3e-83 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1)
Lus10041059 261 / 3e-83 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1)
Lus10002124 253 / 7e-81 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1)
Lus10003001 261 / 2e-80 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1)
Lus10011418 252 / 3e-80 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1)
Lus10039154 251 / 1e-79 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G038100 352 / 2e-119 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1)
Potri.001G377700 346 / 4e-117 AT1G78400 295 / 4e-97 Pectin lyase-like superfamily protein (.1)
Potri.019G066800 269 / 4e-87 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1)
Potri.019G067000 269 / 4e-87 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1)
Potri.019G067050 269 / 4e-87 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1)
Potri.009G169100 265 / 3e-85 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1)
Potri.002G202100 258 / 2e-82 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1)
Potri.019G067100 257 / 2e-82 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1)
Potri.019G067133 257 / 3e-82 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
Potri.019G067200 257 / 3e-82 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0268 Pec_lyase-like PF00295 Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence
>Lus10026184 pacid=23156429 polypeptide=Lus10026184 locus=Lus10026184.g ID=Lus10026184.BGIv1.0 annot-version=v1.0
ATGGATTTGGTTATGGGTTTTGCCAAGCTTTCTGTTCTGCTACTAGTGCTTGCCTCCATTGGTGGCGGCATTGCCATGGATGACGACGATGATGATAGGG
TGTTTAATGTTCTGGACTACGGTGCAAGAGCAGATGGCAAGACCGATAACAGTCAGGCGTTTCTGAGAGCATGGAAAGACGGGTGCGAATGGAGAGGGAA
GGCAAGGATTTTGGTGCCGCCGGGACATTTTATGTGTGACTCGGTCGAGTTTAATGGACCTTGCCAAGGTTCAATGGCTTTTGTAATGAAAGGTCTCTTA
ACCCCTCCTGACAGGCTCAGAACCTCGCCTTGGGTCGCTTTTCGATACATTACCAACTTCTTGCTTTCCGGTCACGGCACCTTTGATGCTCGCGGTTATG
CTCCTCCCACTCCCAAAGCTCGCGATCATTCATTGAGTTTCGCTTTCATAAAAAACGGAACCATACACCATGTCCGATCGGTCGACGCTCGAAACGTGCA
CATGGAGCTGTTCGCGTGCGACAAGATGTTGTTGAGGAACATTATGATCAAGGCGCCAGGAGACAGCCCCAACACCGACGGAATCAAGCTCGGGGCGTGC
ACTAATGTGAAGATTGAAAACTCTGTAATCGGAACAGGGGACGACTGCATCGCCATCCTCGGCGGGACCCACAACCTCGACATCAGCAAAGTGTTTTGCG
GTCCGGGCCACGGAATTAGCATTGGGAGCATGGGTTATTACCCGGACAACGAAGAAAAAGACATTGTTACGGGAGTGACAGTCAGGGACTGCACTTTCCA
AAACACTTCTGACGGCGTCAGGATTAAGACTTGGGCGTCTCCCTACGAGGGACTTGCGGCCAATATAAGCTACAGTAATATTCGGATGCAGAGCGTCCAG
AATCCGATCAACATTGATCAGTTCTACTGCCCTAGGGCGAATTGCAATTCGAAGGTACAGTCGCACGTTCGCATCGAGGATGTGAGGTACGAGAACATTT
GGGGCACGTCGAAGAGGGATGTGGCGATGAAGTTGAATTGTAGTGGCAAGTTTGGTGGTTGCAAAGGGATAGTGATGAAGAACATCAATCTGGTACAAGA
GAATGGCAAGTCTGCTAATGCAATGTGCAACAACGTTGCTGACAAGACTTACGGCGTAATGAAACCAGCTTGCGCCTAG
AA sequence
>Lus10026184 pacid=23156429 polypeptide=Lus10026184 locus=Lus10026184.g ID=Lus10026184.BGIv1.0 annot-version=v1.0
MDLVMGFAKLSVLLLVLASIGGGIAMDDDDDDRVFNVLDYGARADGKTDNSQAFLRAWKDGCEWRGKARILVPPGHFMCDSVEFNGPCQGSMAFVMKGLL
TPPDRLRTSPWVAFRYITNFLLSGHGTFDARGYAPPTPKARDHSLSFAFIKNGTIHHVRSVDARNVHMELFACDKMLLRNIMIKAPGDSPNTDGIKLGAC
TNVKIENSVIGTGDDCIAILGGTHNLDISKVFCGPGHGISIGSMGYYPDNEEKDIVTGVTVRDCTFQNTSDGVRIKTWASPYEGLAANISYSNIRMQSVQ
NPINIDQFYCPRANCNSKVQSHVRIEDVRYENIWGTSKRDVAMKLNCSGKFGGCKGIVMKNINLVQENGKSANAMCNNVADKTYGVMKPACA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78400 Pectin lyase-like superfamily ... Lus10026184 0 1

Lus10026184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.